Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08590 and BWI76_RS08595 are separated by 118 nucleotides BWI76_RS08595 and BWI76_RS08600 are separated by 315 nucleotides BWI76_RS08600 and BWI76_RS08605 are separated by 68 nucleotides
BWI76_RS08590: BWI76_RS08590 - zinc transporter ZitB, at 1,812,132 to 1,813,076
_RS08590
BWI76_RS08595: BWI76_RS08595 - hypothetical protein, at 1,813,195 to 1,813,566
_RS08595
BWI76_RS08600: BWI76_RS08600 - 3-deoxy-7-phosphoheptulonate synthase, at 1,813,882 to 1,814,934
_RS08600
BWI76_RS08605: BWI76_RS08605 - phosphoglyceromutase, at 1,815,003 to 1,815,755
_RS08605
Position (kb)
1813
1814
1815 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1812.988 kb on - strand at 1813.082 kb on + strand at 1813.168 kb on - strand at 1813.170 kb on + strand at 1813.178 kb on - strand at 1813.208 kb on - strand at 1813.326 kb on - strand, within BWI76_RS08595 at 1813.337 kb on + strand, within BWI76_RS08595 at 1813.395 kb on - strand, within BWI76_RS08595 at 1813.422 kb on + strand, within BWI76_RS08595 at 1813.454 kb on + strand, within BWI76_RS08595 at 1813.518 kb on + strand, within BWI76_RS08595 at 1813.524 kb on + strand, within BWI76_RS08595 at 1813.634 kb on - strand at 1813.641 kb on + strand at 1813.641 kb on + strand at 1813.721 kb on - strand at 1814.066 kb on - strand, within BWI76_RS08600 at 1814.104 kb on + strand, within BWI76_RS08600 at 1814.266 kb on - strand, within BWI76_RS08600 at 1814.609 kb on - strand, within BWI76_RS08600 at 1814.653 kb on - strand, within BWI76_RS08600 at 1815.018 kb on - strand at 1815.048 kb on + strand at 1815.204 kb on - strand, within BWI76_RS08605 at 1815.288 kb on - strand, within BWI76_RS08605 at 1815.423 kb on - strand, within BWI76_RS08605 at 1815.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,812,988 - -1.0 1,813,082 + -1.7 1,813,168 - -2.3 1,813,170 + +0.6 1,813,178 - +0.6 1,813,208 - -0.1 1,813,326 - BWI76_RS08595 0.35 +0.5 1,813,337 + BWI76_RS08595 0.38 +0.4 1,813,395 - BWI76_RS08595 0.54 +0.0 1,813,422 + BWI76_RS08595 0.61 +0.1 1,813,454 + BWI76_RS08595 0.70 +1.4 1,813,518 + BWI76_RS08595 0.87 +1.4 1,813,524 + BWI76_RS08595 0.88 -0.0 1,813,634 - +0.6 1,813,641 + -4.2 1,813,641 + -0.7 1,813,721 - +0.5 1,814,066 - BWI76_RS08600 0.17 +1.1 1,814,104 + BWI76_RS08600 0.21 -0.0 1,814,266 - BWI76_RS08600 0.36 +0.3 1,814,609 - BWI76_RS08600 0.69 -3.0 1,814,653 - BWI76_RS08600 0.73 -0.5 1,815,018 - +1.2 1,815,048 + -1.5 1,815,204 - BWI76_RS08605 0.27 -2.1 1,815,288 - BWI76_RS08605 0.38 -1.5 1,815,423 - BWI76_RS08605 0.56 -2.7 1,815,890 + -2.1
Or see this region's nucleotide sequence