Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05880

Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05875 and BWI76_RS05880 are separated by 7 nucleotidesBWI76_RS05880 and BWI76_RS05885 are separated by 100 nucleotides BWI76_RS05875: BWI76_RS05875 - hypothetical protein, at 1,234,394 to 1,236,181 _RS05875 BWI76_RS05880: BWI76_RS05880 - AraC-type DNA-binding domain-containing protein, at 1,236,189 to 1,236,986 _RS05880 BWI76_RS05885: BWI76_RS05885 - anion permease, at 1,237,087 to 1,237,896 _RS05885 Position (kb) 1236 1237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1235.194 kb on - strand, within BWI76_RS05875at 1235.320 kb on + strand, within BWI76_RS05875at 1235.598 kb on + strand, within BWI76_RS05875at 1235.814 kb on - strand, within BWI76_RS05875at 1236.204 kb on - strandat 1236.252 kb on + strandat 1236.300 kb on + strand, within BWI76_RS05880at 1236.430 kb on - strand, within BWI76_RS05880at 1236.989 kb on + strandat 1236.989 kb on + strandat 1236.989 kb on + strandat 1237.174 kb on - strand, within BWI76_RS05885at 1237.282 kb on - strand, within BWI76_RS05885at 1237.538 kb on + strand, within BWI76_RS05885at 1237.680 kb on + strand, within BWI76_RS05885at 1237.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
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1,235,194 - BWI76_RS05875 0.45 +0.1
1,235,320 + BWI76_RS05875 0.52 -2.9
1,235,598 + BWI76_RS05875 0.67 +0.8
1,235,814 - BWI76_RS05875 0.79 -0.4
1,236,204 - -1.1
1,236,252 + +0.0
1,236,300 + BWI76_RS05880 0.14 -3.9
1,236,430 - BWI76_RS05880 0.30 -2.9
1,236,989 + +0.3
1,236,989 + -0.1
1,236,989 + +0.2
1,237,174 - BWI76_RS05885 0.11 -0.4
1,237,282 - BWI76_RS05885 0.24 -1.7
1,237,538 + BWI76_RS05885 0.56 -2.7
1,237,680 + BWI76_RS05885 0.73 -0.7
1,237,883 - -0.8

Or see this region's nucleotide sequence