Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03410 and BWI76_RS03415 are separated by 195 nucleotides BWI76_RS03415 and BWI76_RS03420 are separated by 136 nucleotides BWI76_RS03420 and BWI76_RS03425 overlap by 14 nucleotides
BWI76_RS03410: BWI76_RS03410 - hypothetical protein, at 701,825 to 702,856
_RS03410
BWI76_RS03415: BWI76_RS03415 - LacI family transcriptional regulator, at 703,052 to 704,080
_RS03415
BWI76_RS03420: BWI76_RS03420 - hypothetical protein, at 704,217 to 704,648
_RS03420
BWI76_RS03425: BWI76_RS03425 - dihydrodipicolinate synthase family protein, at 704,635 to 705,546
_RS03425
Position (kb) 703
704
705 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 702.300 kb on + strand, within BWI76_RS03410 at 702.484 kb on + strand, within BWI76_RS03410 at 702.484 kb on + strand, within BWI76_RS03410 at 702.489 kb on + strand, within BWI76_RS03410 at 702.499 kb on + strand, within BWI76_RS03410 at 702.553 kb on + strand, within BWI76_RS03410 at 702.568 kb on - strand, within BWI76_RS03410 at 702.590 kb on + strand, within BWI76_RS03410 at 702.626 kb on - strand, within BWI76_RS03410 at 702.630 kb on + strand, within BWI76_RS03410 at 702.696 kb on + strand, within BWI76_RS03410 at 702.887 kb on + strand at 703.268 kb on - strand, within BWI76_RS03415 at 703.326 kb on - strand, within BWI76_RS03415 at 703.531 kb on - strand, within BWI76_RS03415 at 703.805 kb on + strand, within BWI76_RS03415 at 703.953 kb on + strand, within BWI76_RS03415 at 704.006 kb on - strand at 704.034 kb on + strand at 704.042 kb on - strand at 704.208 kb on - strand at 704.243 kb on - strand at 704.626 kb on - strand at 704.626 kb on - strand at 704.673 kb on + strand at 704.862 kb on + strand, within BWI76_RS03425 at 704.912 kb on - strand, within BWI76_RS03425 at 705.065 kb on + strand, within BWI76_RS03425
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 702,300 + BWI76_RS03410 0.46 -1.3 702,484 + BWI76_RS03410 0.64 +1.0 702,484 + BWI76_RS03410 0.64 +0.5 702,489 + BWI76_RS03410 0.64 +0.3 702,499 + BWI76_RS03410 0.65 -1.1 702,553 + BWI76_RS03410 0.71 -3.2 702,568 - BWI76_RS03410 0.72 -0.5 702,590 + BWI76_RS03410 0.74 +0.4 702,626 - BWI76_RS03410 0.78 -1.0 702,630 + BWI76_RS03410 0.78 -1.0 702,696 + BWI76_RS03410 0.84 +0.1 702,887 + -0.1 703,268 - BWI76_RS03415 0.21 -1.8 703,326 - BWI76_RS03415 0.27 -2.6 703,531 - BWI76_RS03415 0.47 -2.2 703,805 + BWI76_RS03415 0.73 -0.3 703,953 + BWI76_RS03415 0.88 -3.4 704,006 - +0.4 704,034 + -2.2 704,042 - -0.5 704,208 - +1.5 704,243 - -0.1 704,626 - +0.6 704,626 - -0.3 704,673 + +0.5 704,862 + BWI76_RS03425 0.25 +0.3 704,912 - BWI76_RS03425 0.30 +0.0 705,065 + BWI76_RS03425 0.47 -1.1
Or see this region's nucleotide sequence