Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03060 and BWI76_RS03065 are separated by 86 nucleotides BWI76_RS03065 and BWI76_RS03070 are separated by 361 nucleotides
BWI76_RS03060: BWI76_RS03060 - ATP-binding protein, at 626,428 to 627,930
_RS03060
BWI76_RS03065: BWI76_RS03065 - hypothetical protein, at 628,017 to 628,838
_RS03065
BWI76_RS03070: BWI76_RS03070 - Methylmalonate-semialdehyde dehydrogenase [inositol] (EC 1.2.1.27) <small>(from data)</small>, at 629,200 to 630,705
_RS03070
Position (kb) 628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 627.050 kb on + strand, within BWI76_RS03060 at 627.250 kb on - strand, within BWI76_RS03060 at 627.315 kb on - strand, within BWI76_RS03060 at 627.315 kb on - strand, within BWI76_RS03060 at 627.315 kb on - strand, within BWI76_RS03060 at 627.357 kb on + strand, within BWI76_RS03060 at 627.357 kb on + strand, within BWI76_RS03060 at 627.357 kb on + strand, within BWI76_RS03060 at 627.510 kb on - strand, within BWI76_RS03060 at 627.546 kb on - strand, within BWI76_RS03060 at 627.715 kb on + strand, within BWI76_RS03060 at 627.890 kb on + strand at 628.034 kb on + strand at 628.225 kb on - strand, within BWI76_RS03065 at 628.343 kb on + strand, within BWI76_RS03065 at 628.375 kb on - strand, within BWI76_RS03065 at 628.385 kb on + strand, within BWI76_RS03065 at 628.595 kb on + strand, within BWI76_RS03065 at 628.603 kb on - strand, within BWI76_RS03065 at 628.610 kb on + strand, within BWI76_RS03065 at 628.625 kb on - strand, within BWI76_RS03065 at 628.625 kb on - strand, within BWI76_RS03065 at 628.634 kb on + strand, within BWI76_RS03065 at 628.727 kb on - strand, within BWI76_RS03065 at 628.738 kb on - strand, within BWI76_RS03065 at 628.743 kb on - strand, within BWI76_RS03065 at 628.745 kb on + strand, within BWI76_RS03065 at 629.169 kb on - strand at 629.169 kb on - strand at 629.445 kb on + strand, within BWI76_RS03070 at 629.641 kb on + strand, within BWI76_RS03070 at 629.832 kb on + strand, within BWI76_RS03070 at 629.837 kb on + strand, within BWI76_RS03070
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 627,050 + BWI76_RS03060 0.41 -0.4 627,250 - BWI76_RS03060 0.55 -2.2 627,315 - BWI76_RS03060 0.59 +1.5 627,315 - BWI76_RS03060 0.59 +1.0 627,315 - BWI76_RS03060 0.59 +0.8 627,357 + BWI76_RS03060 0.62 -0.3 627,357 + BWI76_RS03060 0.62 -0.3 627,357 + BWI76_RS03060 0.62 -1.6 627,510 - BWI76_RS03060 0.72 -2.2 627,546 - BWI76_RS03060 0.74 +0.3 627,715 + BWI76_RS03060 0.86 -2.0 627,890 + +0.4 628,034 + -3.4 628,225 - BWI76_RS03065 0.25 -0.2 628,343 + BWI76_RS03065 0.40 -0.8 628,375 - BWI76_RS03065 0.44 +0.9 628,385 + BWI76_RS03065 0.45 -1.6 628,595 + BWI76_RS03065 0.70 -1.2 628,603 - BWI76_RS03065 0.71 +0.7 628,610 + BWI76_RS03065 0.72 -1.0 628,625 - BWI76_RS03065 0.74 +0.7 628,625 - BWI76_RS03065 0.74 -1.6 628,634 + BWI76_RS03065 0.75 -1.3 628,727 - BWI76_RS03065 0.86 -0.5 628,738 - BWI76_RS03065 0.88 +2.5 628,743 - BWI76_RS03065 0.88 -0.3 628,745 + BWI76_RS03065 0.89 +0.3 629,169 - +0.8 629,169 - -2.2 629,445 + BWI76_RS03070 0.16 +0.5 629,641 + BWI76_RS03070 0.29 +0.5 629,832 + BWI76_RS03070 0.42 +1.1 629,837 + BWI76_RS03070 0.42 +1.2
Or see this region's nucleotide sequence