Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01880 and BWI76_RS01885 are separated by 133 nucleotides BWI76_RS01885 and BWI76_RS01890 are separated by 90 nucleotides BWI76_RS01890 and BWI76_RS01895 are separated by 192 nucleotides
BWI76_RS01880: BWI76_RS01880 - MATE family efflux transporter, at 383,783 to 385,099
_RS01880
BWI76_RS01885: BWI76_RS01885 - CsbD family protein, at 385,233 to 385,445
_RS01885
BWI76_RS01890: BWI76_RS01890 - transcriptional regulator Zur, at 385,536 to 386,051
_RS01890
BWI76_RS01895: BWI76_RS01895 - cupin, at 386,244 to 386,732
_RS01895
Position (kb) 385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 384.295 kb on - strand, within BWI76_RS01880 at 384.328 kb on + strand, within BWI76_RS01880 at 384.397 kb on + strand, within BWI76_RS01880 at 384.405 kb on - strand, within BWI76_RS01880 at 384.414 kb on + strand, within BWI76_RS01880 at 384.660 kb on + strand, within BWI76_RS01880 at 384.670 kb on + strand, within BWI76_RS01880 at 384.670 kb on + strand, within BWI76_RS01880 at 384.678 kb on - strand, within BWI76_RS01880 at 384.918 kb on + strand, within BWI76_RS01880 at 384.926 kb on - strand, within BWI76_RS01880 at 384.937 kb on - strand, within BWI76_RS01880 at 384.962 kb on + strand, within BWI76_RS01880 at 385.086 kb on - strand at 385.190 kb on + strand at 385.328 kb on + strand, within BWI76_RS01885 at 385.599 kb on - strand, within BWI76_RS01890 at 385.746 kb on + strand, within BWI76_RS01890 at 385.913 kb on + strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.921 kb on - strand, within BWI76_RS01890 at 385.937 kb on + strand, within BWI76_RS01890 at 386.040 kb on + strand at 386.186 kb on - strand at 386.208 kb on + strand at 386.209 kb on - strand at 386.213 kb on + strand at 386.295 kb on - strand, within BWI76_RS01895 at 386.314 kb on + strand, within BWI76_RS01895 at 386.322 kb on - strand, within BWI76_RS01895
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 384,295 - BWI76_RS01880 0.39 +0.0 384,328 + BWI76_RS01880 0.41 +1.2 384,397 + BWI76_RS01880 0.47 +0.5 384,405 - BWI76_RS01880 0.47 +0.2 384,414 + BWI76_RS01880 0.48 -1.1 384,660 + BWI76_RS01880 0.67 +0.6 384,670 + BWI76_RS01880 0.67 +0.2 384,670 + BWI76_RS01880 0.67 +0.1 384,678 - BWI76_RS01880 0.68 -2.5 384,918 + BWI76_RS01880 0.86 -2.3 384,926 - BWI76_RS01880 0.87 +1.3 384,937 - BWI76_RS01880 0.88 +1.1 384,962 + BWI76_RS01880 0.90 +1.3 385,086 - -0.3 385,190 + -0.2 385,328 + BWI76_RS01885 0.45 -3.0 385,599 - BWI76_RS01890 0.12 +0.0 385,746 + BWI76_RS01890 0.41 +1.0 385,913 + BWI76_RS01890 0.73 +1.2 385,921 - BWI76_RS01890 0.75 +0.2 385,921 - BWI76_RS01890 0.75 +0.4 385,937 + BWI76_RS01890 0.78 -1.1 386,040 + +1.2 386,186 - +1.4 386,208 + +0.6 386,209 - +1.2 386,213 + -0.2 386,295 - BWI76_RS01895 0.10 +0.8 386,314 + BWI76_RS01895 0.14 +0.4 386,322 - BWI76_RS01895 0.16 +0.5
Or see this region's nucleotide sequence