Experiment: Serotonin 5 mM in soil extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000910 and ABIE53_000911 are separated by 92 nucleotides ABIE53_000911 and ABIE53_000912 are separated by 144 nucleotides
ABIE53_000910: ABIE53_000910 - putative transport protein, at 986,442 to 988,124
_000910
ABIE53_000911: ABIE53_000911 - aspartate 4-decarboxylase, at 988,217 to 989,881
_000911
ABIE53_000912: ABIE53_000912 - alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate transaminase, at 990,026 to 991,249
_000912
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 987.435 kb on + strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.435 kb on + strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.436 kb on - strand, within ABIE53_000910 at 987.437 kb on + strand, within ABIE53_000910 at 987.437 kb on + strand, within ABIE53_000910 at 987.438 kb on - strand, within ABIE53_000910 at 987.438 kb on - strand, within ABIE53_000910 at 987.438 kb on - strand, within ABIE53_000910 at 987.519 kb on + strand, within ABIE53_000910 at 987.519 kb on + strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.520 kb on - strand, within ABIE53_000910 at 987.565 kb on - strand, within ABIE53_000910 at 987.577 kb on - strand, within ABIE53_000910 at 987.577 kb on - strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.600 kb on + strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.601 kb on - strand, within ABIE53_000910 at 987.610 kb on + strand, within ABIE53_000910 at 987.610 kb on + strand, within ABIE53_000910 at 987.610 kb on + strand, within ABIE53_000910 at 987.611 kb on - strand, within ABIE53_000910 at 987.744 kb on + strand, within ABIE53_000910 at 987.744 kb on + strand, within ABIE53_000910 at 987.745 kb on - strand, within ABIE53_000910 at 987.745 kb on - strand, within ABIE53_000910 at 987.887 kb on - strand, within ABIE53_000910 at 987.887 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.934 kb on - strand, within ABIE53_000910 at 987.945 kb on + strand, within ABIE53_000910 at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.065 kb on + strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.066 kb on - strand at 988.135 kb on + strand at 988.136 kb on - strand at 988.253 kb on - strand at 988.463 kb on + strand, within ABIE53_000911 at 988.463 kb on + strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.464 kb on - strand, within ABIE53_000911 at 988.583 kb on + strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.584 kb on - strand, within ABIE53_000911 at 988.626 kb on - strand, within ABIE53_000911 at 988.681 kb on + strand, within ABIE53_000911 at 988.681 kb on + strand, within ABIE53_000911 at 988.682 kb on - strand, within ABIE53_000911 at 988.682 kb on - strand, within ABIE53_000911 at 988.710 kb on - strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.796 kb on + strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.797 kb on - strand, within ABIE53_000911 at 988.843 kb on + strand, within ABIE53_000911 at 988.843 kb on + strand, within ABIE53_000911 at 988.877 kb on + strand, within ABIE53_000911 at 988.877 kb on + strand, within ABIE53_000911 at 988.878 kb on - strand, within ABIE53_000911 at 988.878 kb on - strand, within ABIE53_000911 at 988.904 kb on + strand, within ABIE53_000911 at 988.905 kb on - strand, within ABIE53_000911 at 988.905 kb on - strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.063 kb on + strand, within ABIE53_000911 at 989.064 kb on - strand, within ABIE53_000911 at 989.064 kb on - strand, within ABIE53_000911 at 989.064 kb on - strand, within ABIE53_000911 at 989.120 kb on + strand, within ABIE53_000911 at 989.120 kb on + strand, within ABIE53_000911 at 989.120 kb on + strand, within ABIE53_000911 at 989.173 kb on + strand, within ABIE53_000911 at 989.174 kb on - strand, within ABIE53_000911 at 989.192 kb on + strand, within ABIE53_000911 at 989.193 kb on - strand, within ABIE53_000911 at 989.201 kb on + strand, within ABIE53_000911 at 989.202 kb on - strand, within ABIE53_000911 at 989.202 kb on - strand, within ABIE53_000911 at 989.315 kb on + strand, within ABIE53_000911 at 989.315 kb on + strand, within ABIE53_000911 at 989.316 kb on - strand, within ABIE53_000911 at 989.477 kb on + strand, within ABIE53_000911 at 989.525 kb on + strand, within ABIE53_000911 at 989.576 kb on + strand, within ABIE53_000911 at 989.576 kb on + strand, within ABIE53_000911 at 989.576 kb on + strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.577 kb on - strand, within ABIE53_000911 at 989.579 kb on + strand, within ABIE53_000911 at 989.579 kb on + strand, within ABIE53_000911 at 989.579 kb on + strand, within ABIE53_000911 at 989.580 kb on - strand, within ABIE53_000911 at 989.580 kb on - strand, within ABIE53_000911 at 989.781 kb on - strand at 989.822 kb on + strand at 989.822 kb on + strand at 989.822 kb on + strand at 989.822 kb on + strand at 989.823 kb on - strand at 989.823 kb on - strand at 989.823 kb on - strand at 989.823 kb on - strand at 989.863 kb on + strand at 989.864 kb on - strand at 990.049 kb on + strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.050 kb on - strand at 990.056 kb on - strand at 990.239 kb on + strand, within ABIE53_000912 at 990.239 kb on + strand, within ABIE53_000912 at 990.239 kb on + strand, within ABIE53_000912 at 990.239 kb on + strand, within ABIE53_000912 at 990.240 kb on - strand, within ABIE53_000912 at 990.240 kb on - strand, within ABIE53_000912 at 990.524 kb on - strand, within ABIE53_000912 at 990.524 kb on - strand, within ABIE53_000912 at 990.524 kb on - strand, within ABIE53_000912 at 990.524 kb on - strand, within ABIE53_000912 at 990.537 kb on - strand, within ABIE53_000912 at 990.818 kb on + strand, within ABIE53_000912 at 990.818 kb on + strand, within ABIE53_000912 at 990.818 kb on + strand, within ABIE53_000912 at 990.819 kb on - strand, within ABIE53_000912 at 990.819 kb on - strand, within ABIE53_000912 at 990.819 kb on - strand, within ABIE53_000912
Per-strain Table
Position Strand Gene LocusTag Fraction Serotonin 5 mM in soil extract remove 987,435 + ABIE53_000910 0.59 -0.6 987,435 + ABIE53_000910 0.59 +1.3 987,435 + ABIE53_000910 0.59 -1.1 987,435 + ABIE53_000910 0.59 -0.3 987,436 - ABIE53_000910 0.59 +0.1 987,436 - ABIE53_000910 0.59 -0.1 987,436 - ABIE53_000910 0.59 -2.7 987,436 - ABIE53_000910 0.59 +1.4 987,437 + ABIE53_000910 0.59 +0.5 987,437 + ABIE53_000910 0.59 -0.3 987,438 - ABIE53_000910 0.59 -0.7 987,438 - ABIE53_000910 0.59 +2.5 987,438 - ABIE53_000910 0.59 +1.1 987,519 + ABIE53_000910 0.64 -0.4 987,519 + ABIE53_000910 0.64 +0.1 987,520 - ABIE53_000910 0.64 -0.3 987,520 - ABIE53_000910 0.64 -0.0 987,520 - ABIE53_000910 0.64 -0.1 987,520 - ABIE53_000910 0.64 +1.5 987,565 - ABIE53_000910 0.67 +0.1 987,577 - ABIE53_000910 0.67 +0.1 987,577 - ABIE53_000910 0.67 -0.2 987,600 + ABIE53_000910 0.69 +2.5 987,600 + ABIE53_000910 0.69 +0.7 987,600 + ABIE53_000910 0.69 +0.4 987,600 + ABIE53_000910 0.69 +2.5 987,600 + ABIE53_000910 0.69 +1.9 987,601 - ABIE53_000910 0.69 +0.2 987,601 - ABIE53_000910 0.69 +2.5 987,601 - ABIE53_000910 0.69 +0.7 987,601 - ABIE53_000910 0.69 -0.8 987,601 - ABIE53_000910 0.69 +1.5 987,601 - ABIE53_000910 0.69 +1.9 987,601 - ABIE53_000910 0.69 -0.7 987,610 + ABIE53_000910 0.69 +1.2 987,610 + ABIE53_000910 0.69 -0.8 987,610 + ABIE53_000910 0.69 -0.5 987,611 - ABIE53_000910 0.69 +0.5 987,744 + ABIE53_000910 0.77 -0.5 987,744 + ABIE53_000910 0.77 -1.5 987,745 - ABIE53_000910 0.77 -2.3 987,745 - ABIE53_000910 0.77 -0.7 987,887 - ABIE53_000910 0.86 -1.4 987,887 - ABIE53_000910 0.86 +2.0 987,934 - ABIE53_000910 0.89 -0.0 987,934 - ABIE53_000910 0.89 -0.3 987,934 - ABIE53_000910 0.89 +0.7 987,934 - ABIE53_000910 0.89 +0.1 987,945 + ABIE53_000910 0.89 +1.3 988,065 + +0.6 988,065 + +1.0 988,065 + -0.7 988,065 + +2.5 988,065 + +2.5 988,065 + +0.7 988,066 - +0.9 988,066 - -0.6 988,066 - -0.6 988,066 - +1.4 988,066 - +1.6 988,135 + -0.9 988,136 - -0.1 988,253 - +0.0 988,463 + ABIE53_000911 0.15 +0.4 988,463 + ABIE53_000911 0.15 -2.6 988,464 - ABIE53_000911 0.15 -0.5 988,464 - ABIE53_000911 0.15 -0.6 988,464 - ABIE53_000911 0.15 +3.5 988,464 - ABIE53_000911 0.15 +2.5 988,464 - ABIE53_000911 0.15 -1.3 988,464 - ABIE53_000911 0.15 -0.1 988,464 - ABIE53_000911 0.15 -0.4 988,583 + ABIE53_000911 0.22 +1.5 988,584 - ABIE53_000911 0.22 +1.0 988,584 - ABIE53_000911 0.22 +1.3 988,584 - ABIE53_000911 0.22 -1.4 988,584 - ABIE53_000911 0.22 +0.4 988,584 - ABIE53_000911 0.22 +0.2 988,584 - ABIE53_000911 0.22 -0.7 988,584 - ABIE53_000911 0.22 +0.2 988,626 - ABIE53_000911 0.25 -0.9 988,681 + ABIE53_000911 0.28 +0.6 988,681 + ABIE53_000911 0.28 -0.2 988,682 - ABIE53_000911 0.28 -1.9 988,682 - ABIE53_000911 0.28 +2.2 988,710 - ABIE53_000911 0.30 -2.0 988,796 + ABIE53_000911 0.35 +2.0 988,796 + ABIE53_000911 0.35 -0.6 988,796 + ABIE53_000911 0.35 -2.1 988,796 + ABIE53_000911 0.35 +2.2 988,797 - ABIE53_000911 0.35 +2.0 988,797 - ABIE53_000911 0.35 -0.8 988,797 - ABIE53_000911 0.35 -0.8 988,797 - ABIE53_000911 0.35 -0.1 988,797 - ABIE53_000911 0.35 -1.1 988,797 - ABIE53_000911 0.35 -0.1 988,843 + ABIE53_000911 0.38 -0.9 988,843 + ABIE53_000911 0.38 -0.2 988,877 + ABIE53_000911 0.40 +2.5 988,877 + ABIE53_000911 0.40 -1.3 988,878 - ABIE53_000911 0.40 -3.3 988,878 - ABIE53_000911 0.40 +3.5 988,904 + ABIE53_000911 0.41 -1.0 988,905 - ABIE53_000911 0.41 -0.3 988,905 - ABIE53_000911 0.41 -0.1 989,063 + ABIE53_000911 0.51 +0.2 989,063 + ABIE53_000911 0.51 -0.5 989,063 + ABIE53_000911 0.51 -1.1 989,063 + ABIE53_000911 0.51 -2.1 989,063 + ABIE53_000911 0.51 -1.2 989,064 - ABIE53_000911 0.51 +0.5 989,064 - ABIE53_000911 0.51 -0.3 989,064 - ABIE53_000911 0.51 -0.4 989,120 + ABIE53_000911 0.54 +1.1 989,120 + ABIE53_000911 0.54 +1.0 989,120 + ABIE53_000911 0.54 -0.1 989,173 + ABIE53_000911 0.57 +4.1 989,174 - ABIE53_000911 0.57 +0.6 989,192 + ABIE53_000911 0.59 +1.5 989,193 - ABIE53_000911 0.59 -1.1 989,201 + ABIE53_000911 0.59 -1.8 989,202 - ABIE53_000911 0.59 -1.5 989,202 - ABIE53_000911 0.59 -1.2 989,315 + ABIE53_000911 0.66 -0.5 989,315 + ABIE53_000911 0.66 -1.0 989,316 - ABIE53_000911 0.66 -0.9 989,477 + ABIE53_000911 0.76 -1.6 989,525 + ABIE53_000911 0.79 -1.6 989,576 + ABIE53_000911 0.82 -0.6 989,576 + ABIE53_000911 0.82 +2.5 989,576 + ABIE53_000911 0.82 -1.5 989,577 - ABIE53_000911 0.82 -0.1 989,577 - ABIE53_000911 0.82 -1.3 989,577 - ABIE53_000911 0.82 -2.0 989,577 - ABIE53_000911 0.82 +1.2 989,577 - ABIE53_000911 0.82 -0.5 989,577 - ABIE53_000911 0.82 +0.9 989,579 + ABIE53_000911 0.82 -0.0 989,579 + ABIE53_000911 0.82 +0.4 989,579 + ABIE53_000911 0.82 -2.8 989,580 - ABIE53_000911 0.82 +1.8 989,580 - ABIE53_000911 0.82 -0.4 989,781 - -0.5 989,822 + -0.7 989,822 + -0.7 989,822 + -0.1 989,822 + -0.6 989,823 - -0.0 989,823 - -0.6 989,823 - +0.0 989,823 - +1.6 989,863 + +0.3 989,864 - +0.4 990,049 + -0.4 990,050 - -1.0 990,050 - -1.8 990,050 - -1.8 990,050 - +0.1 990,050 - +0.4 990,050 - -0.3 990,056 - -2.6 990,239 + ABIE53_000912 0.17 +0.6 990,239 + ABIE53_000912 0.17 -1.1 990,239 + ABIE53_000912 0.17 +2.5 990,239 + ABIE53_000912 0.17 -1.1 990,240 - ABIE53_000912 0.17 +0.2 990,240 - ABIE53_000912 0.17 +2.7 990,524 - ABIE53_000912 0.41 +0.9 990,524 - ABIE53_000912 0.41 +5.7 990,524 - ABIE53_000912 0.41 -3.6 990,524 - ABIE53_000912 0.41 +0.3 990,537 - ABIE53_000912 0.42 +0.1 990,818 + ABIE53_000912 0.65 -0.4 990,818 + ABIE53_000912 0.65 -1.7 990,818 + ABIE53_000912 0.65 +1.5 990,819 - ABIE53_000912 0.65 -0.3 990,819 - ABIE53_000912 0.65 -0.6 990,819 - ABIE53_000912 0.65 -1.1
Or see this region's nucleotide sequence