Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26885 and BWI76_RS26890 are separated by 98 nucleotides BWI76_RS26890 and BWI76_RS26895 are separated by 429 nucleotides BWI76_RS26895 and BWI76_RS26900 are separated by 89 nucleotides BWI76_RS26900 and BWI76_RS26905 are separated by 241 nucleotides
BWI76_RS26885: BWI76_RS26885 - ABC transporter substrate-binding protein, at 5,577,554 to 5,579,161
_RS26885
BWI76_RS26890: BWI76_RS26890 - hypothetical protein, at 5,579,260 to 5,579,502
_RS26890
BWI76_RS26895: BWI76_RS26895 - tRNA-Pro, at 5,579,932 to 5,580,008
_RS26895
BWI76_RS26900: BWI76_RS26900 - phosphoethanolamine transferase, at 5,580,098 to 5,581,786
_RS26900
BWI76_RS26905: BWI76_RS26905 - oxalate/formate antiport family MFS transporter, at 5,582,028 to 5,583,230
_RS26905
Position (kb) 5580
5581
5582 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5579.100 kb on - strand at 5579.121 kb on - strand at 5579.121 kb on - strand at 5579.122 kb on - strand at 5579.124 kb on + strand at 5579.132 kb on - strand at 5579.193 kb on + strand at 5579.230 kb on + strand at 5579.238 kb on - strand at 5579.247 kb on + strand at 5579.257 kb on - strand at 5579.267 kb on - strand at 5579.270 kb on - strand at 5579.303 kb on - strand, within BWI76_RS26890 at 5579.476 kb on - strand, within BWI76_RS26890 at 5579.715 kb on + strand at 5579.715 kb on + strand at 5579.715 kb on + strand at 5579.715 kb on + strand at 5579.723 kb on - strand at 5579.725 kb on - strand at 5579.753 kb on + strand at 5579.867 kb on + strand at 5580.174 kb on - strand at 5580.183 kb on - strand at 5580.193 kb on - strand at 5580.193 kb on - strand at 5580.272 kb on - strand, within BWI76_RS26900 at 5580.497 kb on - strand, within BWI76_RS26900 at 5580.550 kb on + strand, within BWI76_RS26900 at 5580.550 kb on + strand, within BWI76_RS26900 at 5580.550 kb on + strand, within BWI76_RS26900 at 5580.558 kb on - strand, within BWI76_RS26900 at 5580.577 kb on - strand, within BWI76_RS26900 at 5580.708 kb on + strand, within BWI76_RS26900 at 5580.708 kb on + strand, within BWI76_RS26900 at 5580.758 kb on + strand, within BWI76_RS26900 at 5580.780 kb on + strand, within BWI76_RS26900 at 5580.788 kb on - strand, within BWI76_RS26900 at 5580.788 kb on - strand, within BWI76_RS26900 at 5580.788 kb on - strand, within BWI76_RS26900 at 5580.825 kb on - strand, within BWI76_RS26900 at 5580.872 kb on - strand, within BWI76_RS26900 at 5580.888 kb on - strand, within BWI76_RS26900 at 5580.890 kb on - strand, within BWI76_RS26900 at 5581.057 kb on - strand, within BWI76_RS26900 at 5581.153 kb on - strand, within BWI76_RS26900 at 5581.248 kb on + strand, within BWI76_RS26900 at 5581.356 kb on - strand, within BWI76_RS26900 at 5581.397 kb on + strand, within BWI76_RS26900 at 5581.397 kb on + strand, within BWI76_RS26900 at 5581.405 kb on - strand, within BWI76_RS26900 at 5581.535 kb on + strand, within BWI76_RS26900 at 5581.563 kb on + strand, within BWI76_RS26900 at 5581.623 kb on + strand at 5581.670 kb on + strand at 5581.680 kb on - strand at 5581.684 kb on + strand at 5581.684 kb on - strand at 5581.760 kb on - strand at 5581.846 kb on + strand at 5581.846 kb on + strand at 5581.881 kb on + strand at 5581.881 kb on + strand at 5581.881 kb on + strand at 5581.889 kb on - strand at 5581.889 kb on - strand at 5581.906 kb on - strand at 5581.908 kb on - strand at 5581.938 kb on - strand at 5582.092 kb on - strand at 5582.164 kb on + strand, within BWI76_RS26905 at 5582.498 kb on - strand, within BWI76_RS26905 at 5582.502 kb on + strand, within BWI76_RS26905 at 5582.542 kb on - strand, within BWI76_RS26905 at 5582.590 kb on + strand, within BWI76_RS26905 at 5582.591 kb on - strand, within BWI76_RS26905
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 5,579,100 - -0.2 5,579,121 - -0.5 5,579,121 - -0.7 5,579,122 - -1.0 5,579,124 + -0.3 5,579,132 - +1.0 5,579,193 + +1.5 5,579,230 + +0.4 5,579,238 - -0.1 5,579,247 + -2.0 5,579,257 - -0.8 5,579,267 - +0.5 5,579,270 - -1.6 5,579,303 - BWI76_RS26890 0.18 +0.8 5,579,476 - BWI76_RS26890 0.89 -0.4 5,579,715 + +0.0 5,579,715 + -1.1 5,579,715 + +0.0 5,579,715 + -1.6 5,579,723 - +0.0 5,579,725 - -2.0 5,579,753 + +0.0 5,579,867 + -0.9 5,580,174 - +0.1 5,580,183 - -0.4 5,580,193 - +0.5 5,580,193 - +0.1 5,580,272 - BWI76_RS26900 0.10 +0.1 5,580,497 - BWI76_RS26900 0.24 -0.8 5,580,550 + BWI76_RS26900 0.27 +0.6 5,580,550 + BWI76_RS26900 0.27 -1.0 5,580,550 + BWI76_RS26900 0.27 -0.9 5,580,558 - BWI76_RS26900 0.27 -0.1 5,580,577 - BWI76_RS26900 0.28 -0.2 5,580,708 + BWI76_RS26900 0.36 -0.4 5,580,708 + BWI76_RS26900 0.36 -0.5 5,580,758 + BWI76_RS26900 0.39 -1.1 5,580,780 + BWI76_RS26900 0.40 +0.3 5,580,788 - BWI76_RS26900 0.41 -0.4 5,580,788 - BWI76_RS26900 0.41 -1.0 5,580,788 - BWI76_RS26900 0.41 -1.9 5,580,825 - BWI76_RS26900 0.43 +0.3 5,580,872 - BWI76_RS26900 0.46 +0.2 5,580,888 - BWI76_RS26900 0.47 -0.1 5,580,890 - BWI76_RS26900 0.47 +0.1 5,581,057 - BWI76_RS26900 0.57 +0.1 5,581,153 - BWI76_RS26900 0.62 +0.6 5,581,248 + BWI76_RS26900 0.68 -1.3 5,581,356 - BWI76_RS26900 0.74 +0.2 5,581,397 + BWI76_RS26900 0.77 +0.1 5,581,397 + BWI76_RS26900 0.77 +1.0 5,581,405 - BWI76_RS26900 0.77 -0.5 5,581,535 + BWI76_RS26900 0.85 -0.5 5,581,563 + BWI76_RS26900 0.87 -0.2 5,581,623 + +0.4 5,581,670 + +0.3 5,581,680 - +0.7 5,581,684 + -0.1 5,581,684 - -2.3 5,581,760 - +0.5 5,581,846 + +1.0 5,581,846 + -0.5 5,581,881 + +0.6 5,581,881 + -1.6 5,581,881 + -0.2 5,581,889 - -1.2 5,581,889 - -0.9 5,581,906 - -0.2 5,581,908 - -2.0 5,581,938 - -0.6 5,582,092 - -1.1 5,582,164 + BWI76_RS26905 0.11 -2.8 5,582,498 - BWI76_RS26905 0.39 -1.3 5,582,502 + BWI76_RS26905 0.39 -0.4 5,582,542 - BWI76_RS26905 0.43 +0.2 5,582,590 + BWI76_RS26905 0.47 -0.3 5,582,591 - BWI76_RS26905 0.47 -0.7
Or see this region's nucleotide sequence