Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26725 and BWI76_RS26730 are separated by 250 nucleotides BWI76_RS26730 and BWI76_RS26735 are separated by 271 nucleotides
BWI76_RS26725: BWI76_RS26725 - LysR family transcriptional regulator, at 5,533,573 to 5,534,472
_RS26725
BWI76_RS26730: BWI76_RS26730 - inner membrane protein YhjD, at 5,534,723 to 5,535,754
_RS26730
BWI76_RS26735: BWI76_RS26735 - MFS transporter, at 5,536,026 to 5,537,348
_RS26735
Position (kb) 5534
5535
5536 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5533.755 kb on - strand, within BWI76_RS26725 at 5533.778 kb on + strand, within BWI76_RS26725 at 5533.804 kb on - strand, within BWI76_RS26725 at 5533.818 kb on + strand, within BWI76_RS26725 at 5533.826 kb on - strand, within BWI76_RS26725 at 5533.840 kb on - strand, within BWI76_RS26725 at 5533.937 kb on + strand, within BWI76_RS26725 at 5533.984 kb on + strand, within BWI76_RS26725 at 5533.984 kb on + strand, within BWI76_RS26725 at 5533.992 kb on - strand, within BWI76_RS26725 at 5533.992 kb on - strand, within BWI76_RS26725 at 5534.021 kb on + strand, within BWI76_RS26725 at 5534.067 kb on - strand, within BWI76_RS26725 at 5534.177 kb on + strand, within BWI76_RS26725 at 5534.177 kb on + strand, within BWI76_RS26725 at 5534.393 kb on - strand at 5534.430 kb on - strand at 5534.430 kb on - strand at 5534.531 kb on - strand at 5534.589 kb on + strand at 5534.597 kb on - strand at 5534.597 kb on - strand at 5534.753 kb on + strand at 5534.811 kb on + strand at 5534.883 kb on + strand, within BWI76_RS26730 at 5534.884 kb on + strand at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.139 kb on + strand, within BWI76_RS26730 at 5535.247 kb on - strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.328 kb on + strand, within BWI76_RS26730 at 5535.336 kb on - strand, within BWI76_RS26730 at 5535.388 kb on + strand, within BWI76_RS26730 at 5535.412 kb on + strand, within BWI76_RS26730 at 5535.536 kb on + strand, within BWI76_RS26730 at 5535.635 kb on + strand, within BWI76_RS26730 at 5535.672 kb on + strand at 5535.682 kb on + strand at 5535.682 kb on + strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.690 kb on - strand at 5535.743 kb on + strand at 5535.744 kb on - strand at 5535.840 kb on + strand at 5535.847 kb on - strand at 5535.980 kb on + strand at 5536.029 kb on - strand at 5536.068 kb on + strand at 5536.109 kb on + strand at 5536.117 kb on - strand at 5536.256 kb on + strand, within BWI76_RS26735 at 5536.406 kb on + strand, within BWI76_RS26735 at 5536.668 kb on - strand, within BWI76_RS26735 at 5536.727 kb on + strand, within BWI76_RS26735
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 5,533,755 - BWI76_RS26725 0.20 -0.1 5,533,778 + BWI76_RS26725 0.23 -2.4 5,533,804 - BWI76_RS26725 0.26 -0.2 5,533,818 + BWI76_RS26725 0.27 -1.3 5,533,826 - BWI76_RS26725 0.28 +0.6 5,533,840 - BWI76_RS26725 0.30 -1.1 5,533,937 + BWI76_RS26725 0.40 +0.5 5,533,984 + BWI76_RS26725 0.46 -0.5 5,533,984 + BWI76_RS26725 0.46 -1.1 5,533,992 - BWI76_RS26725 0.47 -0.9 5,533,992 - BWI76_RS26725 0.47 +0.1 5,534,021 + BWI76_RS26725 0.50 +0.3 5,534,067 - BWI76_RS26725 0.55 -1.3 5,534,177 + BWI76_RS26725 0.67 +0.6 5,534,177 + BWI76_RS26725 0.67 -0.6 5,534,393 - +0.5 5,534,430 - -1.1 5,534,430 - -0.1 5,534,531 - -0.4 5,534,589 + +0.8 5,534,597 - -0.4 5,534,597 - -0.4 5,534,753 + -0.5 5,534,811 + -2.0 5,534,883 + BWI76_RS26730 0.16 -2.4 5,534,884 + +1.0 5,535,139 + BWI76_RS26730 0.40 -2.4 5,535,139 + BWI76_RS26730 0.40 -1.5 5,535,247 - BWI76_RS26730 0.51 -2.4 5,535,328 + BWI76_RS26730 0.59 -0.8 5,535,328 + BWI76_RS26730 0.59 +0.0 5,535,336 - BWI76_RS26730 0.59 -0.3 5,535,388 + BWI76_RS26730 0.64 -2.4 5,535,412 + BWI76_RS26730 0.67 +0.0 5,535,536 + BWI76_RS26730 0.79 -2.9 5,535,635 + BWI76_RS26730 0.88 +1.0 5,535,672 + -0.5 5,535,682 + +0.0 5,535,682 + -0.6 5,535,690 - -0.1 5,535,690 - -1.3 5,535,690 - -1.0 5,535,690 - +0.5 5,535,690 - +1.3 5,535,690 - -1.5 5,535,690 - +1.0 5,535,690 - -1.2 5,535,743 + -1.1 5,535,744 - +0.0 5,535,840 + -0.3 5,535,847 - -0.7 5,535,980 + -0.2 5,536,029 - -0.5 5,536,068 + -1.0 5,536,109 + -1.0 5,536,117 - -0.2 5,536,256 + BWI76_RS26735 0.17 +0.8 5,536,406 + BWI76_RS26735 0.29 +0.6 5,536,668 - BWI76_RS26735 0.49 +0.2 5,536,727 + BWI76_RS26735 0.53 -0.4
Or see this region's nucleotide sequence