Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26630 and BWI76_RS26635 are separated by 111 nucleotides BWI76_RS26635 and BWI76_RS26640 are separated by 221 nucleotides BWI76_RS26640 and BWI76_RS26645 are separated by 9 nucleotides BWI76_RS26645 and BWI76_RS26650 are separated by 27 nucleotides BWI76_RS26650 and BWI76_RS26655 are separated by 411 nucleotides
BWI76_RS26630: BWI76_RS26630 - pimeloyl-[acyl-carrier protein] methyl ester esterase, at 5,513,047 to 5,513,829
_RS26630
BWI76_RS26635: BWI76_RS26635 - hypothetical protein, at 5,513,941 to 5,514,210
_RS26635
BWI76_RS26640: BWI76_RS26640 - ferrous iron transporter FeoC, at 5,514,432 to 5,514,668
_RS26640
BWI76_RS26645: BWI76_RS26645 - ferrous iron transporter B, at 5,514,678 to 5,516,996
_RS26645
BWI76_RS26650: BWI76_RS26650 - iron transporter, at 5,517,024 to 5,517,251
_RS26650
BWI76_RS26655: BWI76_RS26655 - transcription accessory protein, at 5,517,663 to 5,519,993
_RS26655
Position (kb) 5514
5515
5516
5517 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5513.797 kb on + strand at 5513.930 kb on + strand at 5513.984 kb on + strand, within BWI76_RS26635 at 5513.988 kb on + strand, within BWI76_RS26635 at 5513.996 kb on - strand, within BWI76_RS26635 at 5514.244 kb on + strand at 5514.298 kb on + strand at 5514.608 kb on - strand, within BWI76_RS26640 at 5514.764 kb on - strand at 5514.869 kb on - strand at 5514.999 kb on + strand, within BWI76_RS26645 at 5515.000 kb on + strand, within BWI76_RS26645 at 5515.007 kb on - strand, within BWI76_RS26645 at 5515.071 kb on + strand, within BWI76_RS26645 at 5515.117 kb on - strand, within BWI76_RS26645 at 5515.117 kb on - strand, within BWI76_RS26645 at 5515.180 kb on - strand, within BWI76_RS26645 at 5515.219 kb on + strand, within BWI76_RS26645 at 5515.227 kb on - strand, within BWI76_RS26645 at 5515.304 kb on + strand, within BWI76_RS26645 at 5515.312 kb on - strand, within BWI76_RS26645 at 5515.392 kb on - strand, within BWI76_RS26645 at 5515.397 kb on + strand, within BWI76_RS26645 at 5515.402 kb on + strand, within BWI76_RS26645 at 5515.405 kb on - strand, within BWI76_RS26645 at 5515.427 kb on - strand, within BWI76_RS26645 at 5515.627 kb on - strand, within BWI76_RS26645 at 5515.844 kb on + strand, within BWI76_RS26645 at 5515.951 kb on + strand, within BWI76_RS26645 at 5516.020 kb on - strand, within BWI76_RS26645 at 5516.035 kb on - strand, within BWI76_RS26645 at 5516.035 kb on - strand, within BWI76_RS26645 at 5516.061 kb on - strand, within BWI76_RS26645 at 5516.076 kb on - strand, within BWI76_RS26645 at 5516.162 kb on + strand, within BWI76_RS26645 at 5516.210 kb on + strand, within BWI76_RS26645 at 5516.210 kb on + strand, within BWI76_RS26645 at 5516.218 kb on - strand, within BWI76_RS26645 at 5516.220 kb on - strand, within BWI76_RS26645 at 5516.301 kb on - strand, within BWI76_RS26645 at 5516.312 kb on - strand, within BWI76_RS26645 at 5516.373 kb on + strand, within BWI76_RS26645 at 5516.419 kb on + strand, within BWI76_RS26645 at 5516.467 kb on - strand, within BWI76_RS26645 at 5516.687 kb on + strand, within BWI76_RS26645 at 5516.714 kb on + strand, within BWI76_RS26645 at 5516.818 kb on - strand at 5516.818 kb on - strand at 5516.821 kb on + strand at 5516.879 kb on + strand at 5516.879 kb on + strand at 5516.880 kb on - strand at 5516.891 kb on + strand at 5516.894 kb on - strand at 5516.894 kb on - strand at 5516.894 kb on - strand at 5516.899 kb on - strand at 5516.899 kb on - strand at 5516.899 kb on - strand at 5516.899 kb on - strand at 5516.899 kb on - strand at 5516.899 kb on - strand at 5516.901 kb on + strand at 5516.901 kb on + strand at 5516.901 kb on + strand at 5516.901 kb on + strand at 5516.901 kb on + strand at 5516.901 kb on + strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.909 kb on - strand at 5516.923 kb on + strand at 5516.923 kb on + strand at 5516.923 kb on + strand at 5516.923 kb on + strand at 5516.931 kb on - strand at 5516.931 kb on - strand at 5516.931 kb on - strand at 5516.931 kb on - strand at 5516.936 kb on - strand at 5516.950 kb on - strand at 5516.998 kb on + strand at 5517.074 kb on + strand, within BWI76_RS26650 at 5517.074 kb on + strand, within BWI76_RS26650 at 5517.074 kb on + strand, within BWI76_RS26650 at 5517.075 kb on + strand, within BWI76_RS26650 at 5517.082 kb on - strand, within BWI76_RS26650 at 5517.104 kb on + strand, within BWI76_RS26650 at 5517.117 kb on + strand, within BWI76_RS26650 at 5517.125 kb on - strand, within BWI76_RS26650 at 5517.130 kb on - strand, within BWI76_RS26650 at 5517.161 kb on + strand, within BWI76_RS26650 at 5517.161 kb on + strand, within BWI76_RS26650 at 5517.169 kb on - strand, within BWI76_RS26650 at 5517.169 kb on - strand, within BWI76_RS26650 at 5517.176 kb on - strand, within BWI76_RS26650 at 5517.177 kb on - strand, within BWI76_RS26650 at 5517.194 kb on + strand, within BWI76_RS26650 at 5517.202 kb on - strand, within BWI76_RS26650 at 5517.238 kb on + strand at 5517.238 kb on + strand at 5517.238 kb on + strand at 5517.238 kb on + strand at 5517.238 kb on + strand at 5517.240 kb on - strand at 5517.246 kb on - strand at 5517.246 kb on - strand at 5517.246 kb on - strand at 5517.248 kb on + strand at 5517.248 kb on + strand at 5517.248 kb on + strand at 5517.249 kb on + strand at 5517.253 kb on + strand at 5517.253 kb on + strand at 5517.253 kb on + strand at 5517.253 kb on + strand at 5517.253 kb on + strand at 5517.256 kb on - strand at 5517.261 kb on - strand at 5517.261 kb on - strand at 5517.261 kb on - strand at 5517.285 kb on + strand at 5517.293 kb on - strand at 5517.293 kb on - strand at 5517.311 kb on + strand at 5517.314 kb on + strand at 5517.318 kb on + strand at 5517.319 kb on + strand at 5517.319 kb on + strand at 5517.319 kb on - strand at 5517.326 kb on - strand at 5517.391 kb on + strand at 5517.446 kb on + strand at 5517.446 kb on + strand at 5517.455 kb on + strand at 5517.468 kb on + strand at 5517.468 kb on + strand at 5517.476 kb on - strand at 5517.476 kb on - strand at 5517.476 kb on - strand at 5517.476 kb on - strand at 5517.476 kb on - strand at 5517.476 kb on - strand at 5517.476 kb on - strand at 5517.497 kb on + strand at 5517.569 kb on + strand at 5517.576 kb on - strand at 5517.576 kb on - strand at 5517.599 kb on + strand at 5517.609 kb on + strand at 5517.611 kb on + strand at 5517.627 kb on - strand at 5517.627 kb on - strand at 5517.649 kb on - strand at 5517.702 kb on - strand at 5517.840 kb on + strand at 5517.843 kb on - strand at 5517.880 kb on + strand at 5517.888 kb on + strand at 5517.888 kb on - strand at 5517.904 kb on + strand, within BWI76_RS26655 at 5517.926 kb on - strand, within BWI76_RS26655 at 5517.947 kb on + strand, within BWI76_RS26655 at 5517.959 kb on + strand, within BWI76_RS26655 at 5517.969 kb on + strand, within BWI76_RS26655 at 5517.977 kb on - strand, within BWI76_RS26655
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 5,513,797 + +1.0 5,513,930 + +0.0 5,513,984 + BWI76_RS26635 0.16 -0.1 5,513,988 + BWI76_RS26635 0.17 +0.3 5,513,996 - BWI76_RS26635 0.20 +0.4 5,514,244 + +1.3 5,514,298 + +0.0 5,514,608 - BWI76_RS26640 0.74 -0.8 5,514,764 - +0.5 5,514,869 - +1.5 5,514,999 + BWI76_RS26645 0.14 +0.7 5,515,000 + BWI76_RS26645 0.14 -2.1 5,515,007 - BWI76_RS26645 0.14 +1.7 5,515,071 + BWI76_RS26645 0.17 -0.5 5,515,117 - BWI76_RS26645 0.19 +1.0 5,515,117 - BWI76_RS26645 0.19 +0.4 5,515,180 - BWI76_RS26645 0.22 +0.5 5,515,219 + BWI76_RS26645 0.23 +2.1 5,515,227 - BWI76_RS26645 0.24 +1.0 5,515,304 + BWI76_RS26645 0.27 -0.6 5,515,312 - BWI76_RS26645 0.27 +1.0 5,515,392 - BWI76_RS26645 0.31 -0.8 5,515,397 + BWI76_RS26645 0.31 -0.6 5,515,402 + BWI76_RS26645 0.31 +1.2 5,515,405 - BWI76_RS26645 0.31 +1.7 5,515,427 - BWI76_RS26645 0.32 +0.6 5,515,627 - BWI76_RS26645 0.41 +0.4 5,515,844 + BWI76_RS26645 0.50 +1.4 5,515,951 + BWI76_RS26645 0.55 +0.5 5,516,020 - BWI76_RS26645 0.58 +1.8 5,516,035 - BWI76_RS26645 0.59 -1.3 5,516,035 - BWI76_RS26645 0.59 -1.2 5,516,061 - BWI76_RS26645 0.60 +1.0 5,516,076 - BWI76_RS26645 0.60 +0.2 5,516,162 + BWI76_RS26645 0.64 +0.3 5,516,210 + BWI76_RS26645 0.66 -0.3 5,516,210 + BWI76_RS26645 0.66 -0.6 5,516,218 - BWI76_RS26645 0.66 +1.2 5,516,220 - BWI76_RS26645 0.66 -2.7 5,516,301 - BWI76_RS26645 0.70 +0.9 5,516,312 - BWI76_RS26645 0.70 +0.6 5,516,373 + BWI76_RS26645 0.73 +1.7 5,516,419 + BWI76_RS26645 0.75 +1.6 5,516,467 - BWI76_RS26645 0.77 +1.1 5,516,687 + BWI76_RS26645 0.87 +0.4 5,516,714 + BWI76_RS26645 0.88 +1.0 5,516,818 - +1.1 5,516,818 - +1.3 5,516,821 + +0.7 5,516,879 + +1.0 5,516,879 + +0.4 5,516,880 - +0.9 5,516,891 + +0.7 5,516,894 - -0.6 5,516,894 - +1.0 5,516,894 - +1.0 5,516,899 - +0.7 5,516,899 - -0.1 5,516,899 - +1.0 5,516,899 - +0.6 5,516,899 - +2.4 5,516,899 - -1.0 5,516,901 + +0.8 5,516,901 + -0.2 5,516,901 + +0.5 5,516,901 + -1.4 5,516,901 + +0.0 5,516,901 + -0.8 5,516,909 - +1.4 5,516,909 - +0.8 5,516,909 - -0.6 5,516,909 - +1.5 5,516,909 - -1.0 5,516,909 - +0.2 5,516,909 - -0.2 5,516,909 - -0.6 5,516,909 - -2.7 5,516,909 - +0.2 5,516,909 - -2.1 5,516,923 + +0.2 5,516,923 + +1.0 5,516,923 + -2.1 5,516,923 + -1.6 5,516,931 - +1.1 5,516,931 - -0.1 5,516,931 - +0.3 5,516,931 - -1.7 5,516,936 - +1.0 5,516,950 - +1.2 5,516,998 + -0.6 5,517,074 + BWI76_RS26650 0.22 -2.4 5,517,074 + BWI76_RS26650 0.22 +0.2 5,517,074 + BWI76_RS26650 0.22 +1.0 5,517,075 + BWI76_RS26650 0.22 +0.8 5,517,082 - BWI76_RS26650 0.25 -1.3 5,517,104 + BWI76_RS26650 0.35 +2.2 5,517,117 + BWI76_RS26650 0.41 +2.9 5,517,125 - BWI76_RS26650 0.44 +0.9 5,517,130 - BWI76_RS26650 0.46 +0.4 5,517,161 + BWI76_RS26650 0.60 -0.3 5,517,161 + BWI76_RS26650 0.60 -0.5 5,517,169 - BWI76_RS26650 0.64 +1.1 5,517,169 - BWI76_RS26650 0.64 +1.0 5,517,176 - BWI76_RS26650 0.67 +0.6 5,517,177 - BWI76_RS26650 0.67 +0.8 5,517,194 + BWI76_RS26650 0.75 -2.3 5,517,202 - BWI76_RS26650 0.78 +1.0 5,517,238 + +0.4 5,517,238 + +1.6 5,517,238 + +1.3 5,517,238 + +1.4 5,517,238 + +1.6 5,517,240 - +0.0 5,517,246 - -2.0 5,517,246 - -1.8 5,517,246 - +0.2 5,517,248 + -0.6 5,517,248 + -0.8 5,517,248 + -1.2 5,517,249 + +0.0 5,517,253 + +1.0 5,517,253 + +1.3 5,517,253 + +0.2 5,517,253 + +0.2 5,517,253 + +0.0 5,517,256 - -1.7 5,517,261 - -2.0 5,517,261 - -0.1 5,517,261 - -0.9 5,517,285 + +1.8 5,517,293 - +0.8 5,517,293 - -0.6 5,517,311 + +0.9 5,517,314 + +0.0 5,517,318 + +0.6 5,517,319 + -0.8 5,517,319 + +0.7 5,517,319 - -1.6 5,517,326 - -1.8 5,517,391 + -0.2 5,517,446 + -0.7 5,517,446 + -0.2 5,517,455 + -0.6 5,517,468 + -1.0 5,517,468 + -0.3 5,517,476 - -1.6 5,517,476 - +0.8 5,517,476 - -0.7 5,517,476 - -0.3 5,517,476 - -0.4 5,517,476 - -0.6 5,517,476 - -2.0 5,517,497 + +1.0 5,517,569 + +0.5 5,517,576 - +0.0 5,517,576 - -0.7 5,517,599 + -0.8 5,517,609 + +0.8 5,517,611 + +2.4 5,517,627 - -0.6 5,517,627 - -0.2 5,517,649 - -0.6 5,517,702 - -2.4 5,517,840 + +0.6 5,517,843 - +1.0 5,517,880 + +1.0 5,517,888 + +1.0 5,517,888 - +1.0 5,517,904 + BWI76_RS26655 0.10 +1.0 5,517,926 - BWI76_RS26655 0.11 -1.6 5,517,947 + BWI76_RS26655 0.12 -0.2 5,517,959 + BWI76_RS26655 0.13 -0.2 5,517,969 + BWI76_RS26655 0.13 +0.3 5,517,977 - BWI76_RS26655 0.13 +0.8
Or see this region's nucleotide sequence