Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26415 and BWI76_RS26420 are separated by 142 nucleotides BWI76_RS26420 and BWI76_RS26425 are separated by 78 nucleotides BWI76_RS26425 and BWI76_RS26430 are separated by 211 nucleotides BWI76_RS26430 and BWI76_RS26435 are separated by 166 nucleotides
BWI76_RS26415: BWI76_RS26415 - hypothetical protein, at 5,467,625 to 5,467,984
_RS26415
BWI76_RS26420: BWI76_RS26420 - lysoplasmalogenase, at 5,468,127 to 5,468,753
_RS26420
BWI76_RS26425: BWI76_RS26425 - zinc/cadmium/mercury/lead-transporting ATPase, at 5,468,832 to 5,471,036
_RS26425
BWI76_RS26430: BWI76_RS26430 - sulfurtransferase TusA, at 5,471,248 to 5,471,493
_RS26430
BWI76_RS26435: BWI76_RS26435 - hypothetical protein, at 5,471,660 to 5,472,325
_RS26435
Position (kb)
5468
5469
5470
5471
5472 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 5468.015 kb on + strand at 5468.165 kb on + strand at 5468.165 kb on + strand at 5468.173 kb on - strand at 5468.173 kb on - strand at 5468.227 kb on + strand, within BWI76_RS26420 at 5468.325 kb on + strand, within BWI76_RS26420 at 5468.342 kb on - strand, within BWI76_RS26420 at 5468.354 kb on + strand, within BWI76_RS26420 at 5468.393 kb on - strand at 5468.398 kb on - strand, within BWI76_RS26420 at 5468.498 kb on + strand, within BWI76_RS26420 at 5468.713 kb on - strand at 5469.121 kb on - strand, within BWI76_RS26425 at 5469.482 kb on + strand, within BWI76_RS26425 at 5469.583 kb on + strand, within BWI76_RS26425 at 5469.790 kb on + strand, within BWI76_RS26425 at 5469.823 kb on + strand, within BWI76_RS26425 at 5469.934 kb on - strand, within BWI76_RS26425 at 5469.969 kb on - strand, within BWI76_RS26425 at 5470.059 kb on - strand, within BWI76_RS26425 at 5470.088 kb on + strand, within BWI76_RS26425 at 5470.088 kb on + strand, within BWI76_RS26425 at 5470.096 kb on - strand, within BWI76_RS26425 at 5470.096 kb on - strand, within BWI76_RS26425 at 5470.420 kb on + strand, within BWI76_RS26425 at 5470.799 kb on - strand, within BWI76_RS26425 at 5470.834 kb on - strand at 5470.835 kb on - strand at 5470.992 kb on + strand at 5470.992 kb on + strand at 5471.171 kb on + strand at 5471.530 kb on - strand at 5471.561 kb on - strand at 5471.620 kb on - strand at 5471.706 kb on - strand at 5471.889 kb on + strand, within BWI76_RS26435 at 5471.889 kb on + strand, within BWI76_RS26435 at 5471.907 kb on - strand, within BWI76_RS26435 at 5471.926 kb on + strand, within BWI76_RS26435
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 5,468,015 + -1.5 5,468,165 + +0.4 5,468,165 + +0.3 5,468,173 - -1.0 5,468,173 - -0.6 5,468,227 + BWI76_RS26420 0.16 +1.4 5,468,325 + BWI76_RS26420 0.32 +0.7 5,468,342 - BWI76_RS26420 0.34 -1.5 5,468,354 + BWI76_RS26420 0.36 -0.4 5,468,393 - -0.0 5,468,398 - BWI76_RS26420 0.43 -0.1 5,468,498 + BWI76_RS26420 0.59 -0.4 5,468,713 - +0.1 5,469,121 - BWI76_RS26425 0.13 -4.7 5,469,482 + BWI76_RS26425 0.29 -3.4 5,469,583 + BWI76_RS26425 0.34 -3.7 5,469,790 + BWI76_RS26425 0.43 -2.7 5,469,823 + BWI76_RS26425 0.45 -3.4 5,469,934 - BWI76_RS26425 0.50 -3.7 5,469,969 - BWI76_RS26425 0.52 -4.7 5,470,059 - BWI76_RS26425 0.56 -2.0 5,470,088 + BWI76_RS26425 0.57 -3.9 5,470,088 + BWI76_RS26425 0.57 -1.8 5,470,096 - BWI76_RS26425 0.57 -3.6 5,470,096 - BWI76_RS26425 0.57 -2.8 5,470,420 + BWI76_RS26425 0.72 -4.6 5,470,799 - BWI76_RS26425 0.89 -4.0 5,470,834 - -3.9 5,470,835 - +1.0 5,470,992 + -4.4 5,470,992 + -3.8 5,471,171 + -0.8 5,471,530 - -0.5 5,471,561 - +0.3 5,471,620 - -0.4 5,471,706 - +0.6 5,471,889 + BWI76_RS26435 0.34 -0.5 5,471,889 + BWI76_RS26435 0.34 +0.8 5,471,907 - BWI76_RS26435 0.37 +0.4 5,471,926 + BWI76_RS26435 0.40 +0.3
Or see this region's nucleotide sequence