Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25540 and BWI76_RS25545 are separated by 110 nucleotides BWI76_RS25545 and BWI76_RS25550 overlap by 11 nucleotides BWI76_RS25550 and BWI76_RS25555 are separated by 11 nucleotides
BWI76_RS25540: BWI76_RS25540 - acetyl-CoA carboxylase biotin carboxylase subunit, at 5,307,543 to 5,308,892
_RS25540
BWI76_RS25545: BWI76_RS25545 - hypothetical protein, at 5,309,003 to 5,309,245
_RS25545
BWI76_RS25550: BWI76_RS25550 - sodium:pantothenate symporter, at 5,309,235 to 5,310,686
_RS25550
BWI76_RS25555: BWI76_RS25555 - 50S ribosomal protein L11 methyltransferase, at 5,310,698 to 5,311,579
_RS25555
Position (kb) 5309
5310
5311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5308.950 kb on + strand at 5309.026 kb on - strand at 5309.031 kb on - strand, within BWI76_RS25545 at 5309.136 kb on + strand, within BWI76_RS25545 at 5309.182 kb on + strand, within BWI76_RS25545 at 5309.192 kb on + strand, within BWI76_RS25545 at 5309.235 kb on - strand at 5309.294 kb on - strand at 5309.405 kb on - strand, within BWI76_RS25550 at 5309.405 kb on - strand, within BWI76_RS25550 at 5309.405 kb on - strand, within BWI76_RS25550 at 5309.744 kb on + strand, within BWI76_RS25550 at 5309.745 kb on + strand, within BWI76_RS25550 at 5309.747 kb on + strand, within BWI76_RS25550 at 5309.799 kb on + strand, within BWI76_RS25550 at 5309.807 kb on - strand, within BWI76_RS25550 at 5309.974 kb on + strand, within BWI76_RS25550 at 5309.982 kb on - strand, within BWI76_RS25550 at 5309.982 kb on - strand, within BWI76_RS25550 at 5310.121 kb on - strand, within BWI76_RS25550 at 5310.213 kb on + strand, within BWI76_RS25550 at 5310.303 kb on - strand, within BWI76_RS25550 at 5310.447 kb on - strand, within BWI76_RS25550 at 5310.482 kb on - strand, within BWI76_RS25550 at 5310.537 kb on + strand, within BWI76_RS25550 at 5311.003 kb on + strand, within BWI76_RS25555 at 5311.285 kb on - strand, within BWI76_RS25555 at 5311.339 kb on + strand, within BWI76_RS25555 at 5311.469 kb on + strand, within BWI76_RS25555 at 5311.541 kb on + strand at 5311.669 kb on + strand at 5311.669 kb on + strand at 5311.670 kb on - strand at 5311.677 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 5,308,950 + -0.3 5,309,026 - +1.7 5,309,031 - BWI76_RS25545 0.12 +0.2 5,309,136 + BWI76_RS25545 0.55 +2.1 5,309,182 + BWI76_RS25545 0.74 +1.1 5,309,192 + BWI76_RS25545 0.78 +0.9 5,309,235 - -0.3 5,309,294 - -1.6 5,309,405 - BWI76_RS25550 0.12 -0.2 5,309,405 - BWI76_RS25550 0.12 +1.0 5,309,405 - BWI76_RS25550 0.12 -0.4 5,309,744 + BWI76_RS25550 0.35 -0.6 5,309,745 + BWI76_RS25550 0.35 -0.7 5,309,747 + BWI76_RS25550 0.35 +0.6 5,309,799 + BWI76_RS25550 0.39 +0.3 5,309,807 - BWI76_RS25550 0.39 -2.3 5,309,974 + BWI76_RS25550 0.51 -0.4 5,309,982 - BWI76_RS25550 0.51 -0.5 5,309,982 - BWI76_RS25550 0.51 -0.3 5,310,121 - BWI76_RS25550 0.61 -0.0 5,310,213 + BWI76_RS25550 0.67 -1.8 5,310,303 - BWI76_RS25550 0.74 -1.2 5,310,447 - BWI76_RS25550 0.83 +0.1 5,310,482 - BWI76_RS25550 0.86 +0.2 5,310,537 + BWI76_RS25550 0.90 -2.1 5,311,003 + BWI76_RS25555 0.35 +0.0 5,311,285 - BWI76_RS25555 0.67 -0.8 5,311,339 + BWI76_RS25555 0.73 +0.1 5,311,469 + BWI76_RS25555 0.87 +0.2 5,311,541 + -1.0 5,311,669 + +0.3 5,311,669 + +0.5 5,311,670 - -0.1 5,311,677 - +0.6
Or see this region's nucleotide sequence