Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17680

Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17670 and BWI76_RS17675 overlap by 4 nucleotidesBWI76_RS17675 and BWI76_RS17680 overlap by 7 nucleotidesBWI76_RS17680 and BWI76_RS17685 are separated by 294 nucleotides BWI76_RS17670: BWI76_RS17670 - transglutaminase, at 3,670,260 to 3,671,075 _RS17670 BWI76_RS17675: BWI76_RS17675 - hypothetical protein, at 3,671,072 to 3,672,001 _RS17675 BWI76_RS17680: BWI76_RS17680 - hypothetical protein, at 3,671,995 to 3,673,434 _RS17680 BWI76_RS17685: BWI76_RS17685 - beta-glucosidase, at 3,673,729 to 3,676,509 _RS17685 Position (kb) 3671 3672 3673 3674Strain fitness (log2 ratio) -2 -1 0 1at 3671.105 kb on + strandat 3671.377 kb on - strand, within BWI76_RS17675at 3671.538 kb on - strand, within BWI76_RS17675at 3671.694 kb on - strand, within BWI76_RS17675at 3671.967 kb on + strandat 3672.191 kb on - strand, within BWI76_RS17680at 3672.268 kb on - strand, within BWI76_RS17680at 3672.342 kb on + strand, within BWI76_RS17680at 3672.350 kb on - strand, within BWI76_RS17680at 3672.429 kb on + strand, within BWI76_RS17680at 3672.453 kb on + strand, within BWI76_RS17680at 3672.465 kb on - strand, within BWI76_RS17680at 3672.657 kb on - strand, within BWI76_RS17680at 3672.657 kb on - strand, within BWI76_RS17680at 3672.704 kb on - strand, within BWI76_RS17680at 3672.745 kb on + strand, within BWI76_RS17680at 3672.843 kb on + strand, within BWI76_RS17680at 3672.843 kb on + strand, within BWI76_RS17680at 3672.848 kb on + strand, within BWI76_RS17680at 3672.856 kb on - strand, within BWI76_RS17680at 3673.262 kb on - strand, within BWI76_RS17680at 3673.508 kb on - strandat 3673.531 kb on - strandat 3673.655 kb on - strandat 3673.679 kb on - strandat 3673.985 kb on - strandat 3674.050 kb on - strand, within BWI76_RS17685at 3674.050 kb on - strand, within BWI76_RS17685at 3674.100 kb on + strand, within BWI76_RS17685at 3674.166 kb on + strand, within BWI76_RS17685at 3674.217 kb on - strand, within BWI76_RS17685at 3674.374 kb on + strand, within BWI76_RS17685at 3674.391 kb on + strand, within BWI76_RS17685

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
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3,671,105 + +0.3
3,671,377 - BWI76_RS17675 0.33 -1.7
3,671,538 - BWI76_RS17675 0.50 +1.3
3,671,694 - BWI76_RS17675 0.67 -0.3
3,671,967 + -0.5
3,672,191 - BWI76_RS17680 0.14 +0.9
3,672,268 - BWI76_RS17680 0.19 +1.1
3,672,342 + BWI76_RS17680 0.24 +1.3
3,672,350 - BWI76_RS17680 0.25 +0.2
3,672,429 + BWI76_RS17680 0.30 +0.6
3,672,453 + BWI76_RS17680 0.32 +0.9
3,672,465 - BWI76_RS17680 0.33 +1.5
3,672,657 - BWI76_RS17680 0.46 +0.9
3,672,657 - BWI76_RS17680 0.46 -0.5
3,672,704 - BWI76_RS17680 0.49 +0.5
3,672,745 + BWI76_RS17680 0.52 -1.3
3,672,843 + BWI76_RS17680 0.59 +0.1
3,672,843 + BWI76_RS17680 0.59 -1.3
3,672,848 + BWI76_RS17680 0.59 +0.5
3,672,856 - BWI76_RS17680 0.60 +1.2
3,673,262 - BWI76_RS17680 0.88 +0.5
3,673,508 - -0.6
3,673,531 - -1.8
3,673,655 - +0.3
3,673,679 - -0.3
3,673,985 - -0.1
3,674,050 - BWI76_RS17685 0.12 +0.5
3,674,050 - BWI76_RS17685 0.12 +0.6
3,674,100 + BWI76_RS17685 0.13 +0.7
3,674,166 + BWI76_RS17685 0.16 +0.4
3,674,217 - BWI76_RS17685 0.18 +0.6
3,674,374 + BWI76_RS17685 0.23 -0.9
3,674,391 + BWI76_RS17685 0.24 -0.6

Or see this region's nucleotide sequence