Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17670 and BWI76_RS17675 overlap by 4 nucleotides BWI76_RS17675 and BWI76_RS17680 overlap by 7 nucleotides BWI76_RS17680 and BWI76_RS17685 are separated by 294 nucleotides
BWI76_RS17670: BWI76_RS17670 - transglutaminase, at 3,670,260 to 3,671,075
_RS17670
BWI76_RS17675: BWI76_RS17675 - hypothetical protein, at 3,671,072 to 3,672,001
_RS17675
BWI76_RS17680: BWI76_RS17680 - hypothetical protein, at 3,671,995 to 3,673,434
_RS17680
BWI76_RS17685: BWI76_RS17685 - beta-glucosidase, at 3,673,729 to 3,676,509
_RS17685
Position (kb)
3671
3672
3673
3674 Strain fitness (log2 ratio)
-2
-1
0
1 at 3671.105 kb on + strand at 3671.377 kb on - strand, within BWI76_RS17675 at 3671.538 kb on - strand, within BWI76_RS17675 at 3671.694 kb on - strand, within BWI76_RS17675 at 3671.967 kb on + strand at 3672.191 kb on - strand, within BWI76_RS17680 at 3672.268 kb on - strand, within BWI76_RS17680 at 3672.342 kb on + strand, within BWI76_RS17680 at 3672.350 kb on - strand, within BWI76_RS17680 at 3672.429 kb on + strand, within BWI76_RS17680 at 3672.453 kb on + strand, within BWI76_RS17680 at 3672.465 kb on - strand, within BWI76_RS17680 at 3672.657 kb on - strand, within BWI76_RS17680 at 3672.657 kb on - strand, within BWI76_RS17680 at 3672.704 kb on - strand, within BWI76_RS17680 at 3672.745 kb on + strand, within BWI76_RS17680 at 3672.843 kb on + strand, within BWI76_RS17680 at 3672.843 kb on + strand, within BWI76_RS17680 at 3672.848 kb on + strand, within BWI76_RS17680 at 3672.856 kb on - strand, within BWI76_RS17680 at 3673.262 kb on - strand, within BWI76_RS17680 at 3673.508 kb on - strand at 3673.531 kb on - strand at 3673.655 kb on - strand at 3673.679 kb on - strand at 3673.985 kb on - strand at 3674.050 kb on - strand, within BWI76_RS17685 at 3674.050 kb on - strand, within BWI76_RS17685 at 3674.100 kb on + strand, within BWI76_RS17685 at 3674.166 kb on + strand, within BWI76_RS17685 at 3674.217 kb on - strand, within BWI76_RS17685 at 3674.374 kb on + strand, within BWI76_RS17685 at 3674.391 kb on + strand, within BWI76_RS17685
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 3,671,105 + +0.3 3,671,377 - BWI76_RS17675 0.33 -1.7 3,671,538 - BWI76_RS17675 0.50 +1.3 3,671,694 - BWI76_RS17675 0.67 -0.3 3,671,967 + -0.5 3,672,191 - BWI76_RS17680 0.14 +0.9 3,672,268 - BWI76_RS17680 0.19 +1.1 3,672,342 + BWI76_RS17680 0.24 +1.3 3,672,350 - BWI76_RS17680 0.25 +0.2 3,672,429 + BWI76_RS17680 0.30 +0.6 3,672,453 + BWI76_RS17680 0.32 +0.9 3,672,465 - BWI76_RS17680 0.33 +1.5 3,672,657 - BWI76_RS17680 0.46 +0.9 3,672,657 - BWI76_RS17680 0.46 -0.5 3,672,704 - BWI76_RS17680 0.49 +0.5 3,672,745 + BWI76_RS17680 0.52 -1.3 3,672,843 + BWI76_RS17680 0.59 +0.1 3,672,843 + BWI76_RS17680 0.59 -1.3 3,672,848 + BWI76_RS17680 0.59 +0.5 3,672,856 - BWI76_RS17680 0.60 +1.2 3,673,262 - BWI76_RS17680 0.88 +0.5 3,673,508 - -0.6 3,673,531 - -1.8 3,673,655 - +0.3 3,673,679 - -0.3 3,673,985 - -0.1 3,674,050 - BWI76_RS17685 0.12 +0.5 3,674,050 - BWI76_RS17685 0.12 +0.6 3,674,100 + BWI76_RS17685 0.13 +0.7 3,674,166 + BWI76_RS17685 0.16 +0.4 3,674,217 - BWI76_RS17685 0.18 +0.6 3,674,374 + BWI76_RS17685 0.23 -0.9 3,674,391 + BWI76_RS17685 0.24 -0.6
Or see this region's nucleotide sequence