Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16835

Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16830 and BWI76_RS16835 are separated by 424 nucleotidesBWI76_RS16835 and BWI76_RS16840 are separated by 195 nucleotidesBWI76_RS16840 and BWI76_RS16845 overlap by 7 nucleotides BWI76_RS16830: BWI76_RS16830 - ABC transporter, at 3,488,979 to 3,489,800 _RS16830 BWI76_RS16835: BWI76_RS16835 - TonB-dependent siderophore receptor, at 3,490,225 to 3,492,378 _RS16835 BWI76_RS16840: BWI76_RS16840 - ABC transporter, at 3,492,574 to 3,493,362 _RS16840 BWI76_RS16845: BWI76_RS16845 - ABC transporter permease, at 3,493,356 to 3,494,351 _RS16845 Position (kb) 3490 3491 3492 3493Strain fitness (log2 ratio) -1 0 1at 3489.236 kb on + strand, within BWI76_RS16830at 3489.349 kb on + strand, within BWI76_RS16830at 3489.441 kb on + strand, within BWI76_RS16830at 3489.450 kb on + strand, within BWI76_RS16830at 3489.461 kb on + strand, within BWI76_RS16830at 3490.065 kb on + strandat 3490.120 kb on + strandat 3490.384 kb on - strandat 3490.669 kb on - strand, within BWI76_RS16835at 3490.956 kb on - strand, within BWI76_RS16835at 3491.319 kb on - strand, within BWI76_RS16835at 3491.376 kb on + strand, within BWI76_RS16835at 3491.436 kb on + strand, within BWI76_RS16835at 3491.448 kb on + strand, within BWI76_RS16835at 3491.591 kb on + strand, within BWI76_RS16835at 3491.597 kb on - strand, within BWI76_RS16835at 3491.789 kb on + strand, within BWI76_RS16835at 3491.808 kb on + strand, within BWI76_RS16835at 3491.847 kb on + strand, within BWI76_RS16835at 3491.871 kb on + strand, within BWI76_RS16835at 3492.086 kb on + strand, within BWI76_RS16835at 3492.127 kb on - strand, within BWI76_RS16835at 3492.297 kb on - strandat 3492.470 kb on + strandat 3492.531 kb on + strandat 3492.735 kb on - strand, within BWI76_RS16840at 3492.765 kb on + strand, within BWI76_RS16840at 3493.165 kb on - strand, within BWI76_RS16840

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
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3,489,236 + BWI76_RS16830 0.31 +0.1
3,489,349 + BWI76_RS16830 0.45 +0.4
3,489,441 + BWI76_RS16830 0.56 +0.3
3,489,450 + BWI76_RS16830 0.57 -0.6
3,489,461 + BWI76_RS16830 0.59 -0.6
3,490,065 + +0.3
3,490,120 + +0.7
3,490,384 - +0.9
3,490,669 - BWI76_RS16835 0.21 +0.2
3,490,956 - BWI76_RS16835 0.34 +0.3
3,491,319 - BWI76_RS16835 0.51 +0.3
3,491,376 + BWI76_RS16835 0.53 -1.1
3,491,436 + BWI76_RS16835 0.56 +0.4
3,491,448 + BWI76_RS16835 0.57 +1.0
3,491,591 + BWI76_RS16835 0.63 +1.3
3,491,597 - BWI76_RS16835 0.64 -0.2
3,491,789 + BWI76_RS16835 0.73 -0.4
3,491,808 + BWI76_RS16835 0.73 -0.1
3,491,847 + BWI76_RS16835 0.75 -1.0
3,491,871 + BWI76_RS16835 0.76 +0.2
3,492,086 + BWI76_RS16835 0.86 +0.5
3,492,127 - BWI76_RS16835 0.88 +0.0
3,492,297 - +0.3
3,492,470 + -1.3
3,492,531 + -0.4
3,492,735 - BWI76_RS16840 0.20 +0.8
3,492,765 + BWI76_RS16840 0.24 -0.4
3,493,165 - BWI76_RS16840 0.75 -0.8

Or see this region's nucleotide sequence