Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10475 and BWI76_RS10480 are separated by 0 nucleotides BWI76_RS10480 and BWI76_RS10485 are separated by 10 nucleotides BWI76_RS10485 and BWI76_RS10490 are separated by 13 nucleotides
BWI76_RS10475: BWI76_RS10475 - binding-protein-dependent transport system inner membrane protein, at 2,212,795 to 2,214,369
_RS10475
BWI76_RS10480: BWI76_RS10480 - amino acid ABC transporter substrate-binding protein, at 2,214,370 to 2,215,398
_RS10480
BWI76_RS10485: BWI76_RS10485 - (hypo)xanthine hydroxylase reductase, at 2,215,409 to 2,216,377
_RS10485
BWI76_RS10490: BWI76_RS10490 - vanillate O-demethylase oxygenase subunit, at 2,216,391 to 2,217,428
_RS10490
Position (kb)
2214
2215
2216 Strain fitness (log2 ratio)
-2
-1
0
1 at 2213.968 kb on - strand, within BWI76_RS10475 at 2214.160 kb on + strand, within BWI76_RS10475 at 2214.242 kb on + strand at 2214.616 kb on + strand, within BWI76_RS10480 at 2214.725 kb on + strand, within BWI76_RS10480 at 2214.753 kb on + strand, within BWI76_RS10480 at 2214.787 kb on - strand, within BWI76_RS10480 at 2214.854 kb on - strand, within BWI76_RS10480 at 2214.915 kb on + strand, within BWI76_RS10480 at 2214.923 kb on - strand, within BWI76_RS10480 at 2214.941 kb on + strand, within BWI76_RS10480 at 2214.978 kb on + strand, within BWI76_RS10480 at 2215.011 kb on + strand, within BWI76_RS10480 at 2215.029 kb on + strand, within BWI76_RS10480 at 2215.037 kb on - strand, within BWI76_RS10480 at 2215.037 kb on - strand at 2215.197 kb on + strand, within BWI76_RS10480 at 2215.358 kb on + strand at 2215.464 kb on - strand at 2215.566 kb on + strand, within BWI76_RS10485 at 2215.611 kb on - strand, within BWI76_RS10485 at 2216.066 kb on + strand, within BWI76_RS10485 at 2216.201 kb on + strand, within BWI76_RS10485
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 2,213,968 - BWI76_RS10475 0.74 -1.6 2,214,160 + BWI76_RS10475 0.87 -1.6 2,214,242 + -1.2 2,214,616 + BWI76_RS10480 0.24 -1.8 2,214,725 + BWI76_RS10480 0.34 -0.2 2,214,753 + BWI76_RS10480 0.37 -2.1 2,214,787 - BWI76_RS10480 0.41 -1.4 2,214,854 - BWI76_RS10480 0.47 -0.4 2,214,915 + BWI76_RS10480 0.53 -1.2 2,214,923 - BWI76_RS10480 0.54 -2.5 2,214,941 + BWI76_RS10480 0.55 -1.5 2,214,978 + BWI76_RS10480 0.59 -0.6 2,215,011 + BWI76_RS10480 0.62 -1.2 2,215,029 + BWI76_RS10480 0.64 -1.8 2,215,037 - BWI76_RS10480 0.65 -1.6 2,215,037 - +0.3 2,215,197 + BWI76_RS10480 0.80 -1.9 2,215,358 + -2.0 2,215,464 - +0.3 2,215,566 + BWI76_RS10485 0.16 -1.0 2,215,611 - BWI76_RS10485 0.21 -0.7 2,216,066 + BWI76_RS10485 0.68 +0.4 2,216,201 + BWI76_RS10485 0.82 +0.7
Or see this region's nucleotide sequence