Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10480

Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10475 and BWI76_RS10480 are separated by 0 nucleotidesBWI76_RS10480 and BWI76_RS10485 are separated by 10 nucleotidesBWI76_RS10485 and BWI76_RS10490 are separated by 13 nucleotides BWI76_RS10475: BWI76_RS10475 - binding-protein-dependent transport system inner membrane protein, at 2,212,795 to 2,214,369 _RS10475 BWI76_RS10480: BWI76_RS10480 - amino acid ABC transporter substrate-binding protein, at 2,214,370 to 2,215,398 _RS10480 BWI76_RS10485: BWI76_RS10485 - (hypo)xanthine hydroxylase reductase, at 2,215,409 to 2,216,377 _RS10485 BWI76_RS10490: BWI76_RS10490 - vanillate O-demethylase oxygenase subunit, at 2,216,391 to 2,217,428 _RS10490 Position (kb) 2214 2215 2216Strain fitness (log2 ratio) -2 -1 0 1at 2213.968 kb on - strand, within BWI76_RS10475at 2214.160 kb on + strand, within BWI76_RS10475at 2214.242 kb on + strandat 2214.616 kb on + strand, within BWI76_RS10480at 2214.725 kb on + strand, within BWI76_RS10480at 2214.753 kb on + strand, within BWI76_RS10480at 2214.787 kb on - strand, within BWI76_RS10480at 2214.854 kb on - strand, within BWI76_RS10480at 2214.915 kb on + strand, within BWI76_RS10480at 2214.923 kb on - strand, within BWI76_RS10480at 2214.941 kb on + strand, within BWI76_RS10480at 2214.978 kb on + strand, within BWI76_RS10480at 2215.011 kb on + strand, within BWI76_RS10480at 2215.029 kb on + strand, within BWI76_RS10480at 2215.037 kb on - strand, within BWI76_RS10480at 2215.037 kb on - strandat 2215.197 kb on + strand, within BWI76_RS10480at 2215.358 kb on + strandat 2215.464 kb on - strandat 2215.566 kb on + strand, within BWI76_RS10485at 2215.611 kb on - strand, within BWI76_RS10485at 2216.066 kb on + strand, within BWI76_RS10485at 2216.201 kb on + strand, within BWI76_RS10485

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
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2,213,968 - BWI76_RS10475 0.74 -1.6
2,214,160 + BWI76_RS10475 0.87 -1.6
2,214,242 + -1.2
2,214,616 + BWI76_RS10480 0.24 -1.8
2,214,725 + BWI76_RS10480 0.34 -0.2
2,214,753 + BWI76_RS10480 0.37 -2.1
2,214,787 - BWI76_RS10480 0.41 -1.4
2,214,854 - BWI76_RS10480 0.47 -0.4
2,214,915 + BWI76_RS10480 0.53 -1.2
2,214,923 - BWI76_RS10480 0.54 -2.5
2,214,941 + BWI76_RS10480 0.55 -1.5
2,214,978 + BWI76_RS10480 0.59 -0.6
2,215,011 + BWI76_RS10480 0.62 -1.2
2,215,029 + BWI76_RS10480 0.64 -1.8
2,215,037 - BWI76_RS10480 0.65 -1.6
2,215,037 - +0.3
2,215,197 + BWI76_RS10480 0.80 -1.9
2,215,358 + -2.0
2,215,464 - +0.3
2,215,566 + BWI76_RS10485 0.16 -1.0
2,215,611 - BWI76_RS10485 0.21 -0.7
2,216,066 + BWI76_RS10485 0.68 +0.4
2,216,201 + BWI76_RS10485 0.82 +0.7

Or see this region's nucleotide sequence