Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08795

Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08790 and BWI76_RS08795 are separated by 4 nucleotidesBWI76_RS08795 and BWI76_RS08800 overlap by 4 nucleotides BWI76_RS08790: BWI76_RS08790 - two-component sensor histidine kinase, at 1,853,744 to 1,854,841 _RS08790 BWI76_RS08795: BWI76_RS08795 - DNA-binding response regulator, at 1,854,846 to 1,855,517 _RS08795 BWI76_RS08800: BWI76_RS08800 - phosphoethanolamine transferase EptA, at 1,855,514 to 1,857,157 _RS08800 Position (kb) 1854 1855 1856Strain fitness (log2 ratio) -2 -1 0 1at 1853.856 kb on - strand, within BWI76_RS08790at 1853.876 kb on + strand, within BWI76_RS08790at 1854.135 kb on - strand, within BWI76_RS08790at 1854.340 kb on + strand, within BWI76_RS08790at 1854.340 kb on + strand, within BWI76_RS08790at 1854.370 kb on - strand, within BWI76_RS08790at 1854.619 kb on + strand, within BWI76_RS08790at 1854.629 kb on - strand, within BWI76_RS08790at 1854.638 kb on + strand, within BWI76_RS08790at 1854.821 kb on - strandat 1854.851 kb on - strandat 1854.893 kb on - strandat 1854.929 kb on + strand, within BWI76_RS08795at 1854.937 kb on - strand, within BWI76_RS08795at 1854.952 kb on + strand, within BWI76_RS08795at 1855.344 kb on + strand, within BWI76_RS08795at 1855.586 kb on - strandat 1855.839 kb on - strand, within BWI76_RS08800at 1856.083 kb on - strand, within BWI76_RS08800at 1856.122 kb on + strand, within BWI76_RS08800

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
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1,853,856 - BWI76_RS08790 0.10 -1.8
1,853,876 + BWI76_RS08790 0.12 -1.5
1,854,135 - BWI76_RS08790 0.36 -1.7
1,854,340 + BWI76_RS08790 0.54 -0.9
1,854,340 + BWI76_RS08790 0.54 -2.7
1,854,370 - BWI76_RS08790 0.57 -0.3
1,854,619 + BWI76_RS08790 0.80 -0.7
1,854,629 - BWI76_RS08790 0.81 -1.2
1,854,638 + BWI76_RS08790 0.81 -0.4
1,854,821 - -0.8
1,854,851 - +0.1
1,854,893 - -1.1
1,854,929 + BWI76_RS08795 0.12 -1.1
1,854,937 - BWI76_RS08795 0.14 -1.4
1,854,952 + BWI76_RS08795 0.16 -0.8
1,855,344 + BWI76_RS08795 0.74 -1.4
1,855,586 - +0.5
1,855,839 - BWI76_RS08800 0.20 -0.3
1,856,083 - BWI76_RS08800 0.35 +0.1
1,856,122 + BWI76_RS08800 0.37 +0.1

Or see this region's nucleotide sequence