Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08475

Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08470 and BWI76_RS08475 are separated by 3 nucleotidesBWI76_RS08475 and BWI76_RS08480 overlap by 1 nucleotides BWI76_RS08470: BWI76_RS08470 - 3-methylaspartate ammonia-lyase, at 1,792,965 to 1,794,335 _RS08470 BWI76_RS08475: BWI76_RS08475 - methylaspartate ammonia-lyase, at 1,794,339 to 1,795,580 _RS08475 BWI76_RS08480: BWI76_RS08480 - methylaspartate mutase subunit E, at 1,795,580 to 1,797,025 _RS08480 Position (kb) 1794 1795 1796Strain fitness (log2 ratio) -2 -1 0 1at 1793.340 kb on + strand, within BWI76_RS08470at 1793.490 kb on + strand, within BWI76_RS08470at 1793.703 kb on + strand, within BWI76_RS08470at 1793.736 kb on + strand, within BWI76_RS08470at 1793.736 kb on + strand, within BWI76_RS08470at 1793.736 kb on + strand, within BWI76_RS08470at 1793.736 kb on + strand, within BWI76_RS08470at 1793.736 kb on + strand, within BWI76_RS08470at 1793.860 kb on + strand, within BWI76_RS08470at 1793.868 kb on - strand, within BWI76_RS08470at 1794.157 kb on + strand, within BWI76_RS08470at 1794.196 kb on - strand, within BWI76_RS08470at 1794.548 kb on - strand, within BWI76_RS08475at 1794.594 kb on - strandat 1794.646 kb on - strand, within BWI76_RS08475at 1794.654 kb on - strandat 1794.654 kb on - strand, within BWI76_RS08475at 1794.729 kb on - strand, within BWI76_RS08475at 1794.763 kb on + strand, within BWI76_RS08475at 1794.773 kb on + strand, within BWI76_RS08475at 1794.773 kb on + strand, within BWI76_RS08475at 1794.993 kb on - strand, within BWI76_RS08475at 1795.257 kb on + strand, within BWI76_RS08475at 1795.258 kb on - strand, within BWI76_RS08475at 1795.370 kb on - strand, within BWI76_RS08475at 1795.454 kb on + strand, within BWI76_RS08475at 1795.622 kb on - strandat 1795.704 kb on - strandat 1795.720 kb on + strandat 1795.835 kb on + strand, within BWI76_RS08480at 1795.851 kb on - strand, within BWI76_RS08480at 1795.886 kb on + strand, within BWI76_RS08480at 1795.894 kb on - strand, within BWI76_RS08480at 1795.894 kb on - strand, within BWI76_RS08480at 1795.979 kb on - strand, within BWI76_RS08480at 1796.394 kb on - strand, within BWI76_RS08480

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
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1,793,340 + BWI76_RS08470 0.27 -1.6
1,793,490 + BWI76_RS08470 0.38 +0.4
1,793,703 + BWI76_RS08470 0.54 +0.6
1,793,736 + BWI76_RS08470 0.56 -0.9
1,793,736 + BWI76_RS08470 0.56 -1.0
1,793,736 + BWI76_RS08470 0.56 +0.1
1,793,736 + BWI76_RS08470 0.56 -0.9
1,793,736 + BWI76_RS08470 0.56 +1.7
1,793,860 + BWI76_RS08470 0.65 -1.7
1,793,868 - BWI76_RS08470 0.66 -0.2
1,794,157 + BWI76_RS08470 0.87 +0.7
1,794,196 - BWI76_RS08470 0.90 +0.5
1,794,548 - BWI76_RS08475 0.17 +0.9
1,794,594 - -0.4
1,794,646 - BWI76_RS08475 0.25 -0.3
1,794,654 - +1.1
1,794,654 - BWI76_RS08475 0.25 +0.4
1,794,729 - BWI76_RS08475 0.31 +1.0
1,794,763 + BWI76_RS08475 0.34 +0.3
1,794,773 + BWI76_RS08475 0.35 -0.0
1,794,773 + BWI76_RS08475 0.35 -0.3
1,794,993 - BWI76_RS08475 0.53 -0.7
1,795,257 + BWI76_RS08475 0.74 -1.4
1,795,258 - BWI76_RS08475 0.74 -0.4
1,795,370 - BWI76_RS08475 0.83 -2.0
1,795,454 + BWI76_RS08475 0.90 +0.2
1,795,622 - +0.5
1,795,704 - +0.2
1,795,720 + -0.4
1,795,835 + BWI76_RS08480 0.18 -0.1
1,795,851 - BWI76_RS08480 0.19 +0.3
1,795,886 + BWI76_RS08480 0.21 -0.5
1,795,894 - BWI76_RS08480 0.22 +0.0
1,795,894 - BWI76_RS08480 0.22 -0.6
1,795,979 - BWI76_RS08480 0.28 +0.3
1,796,394 - BWI76_RS08480 0.56 -1.7

Or see this region's nucleotide sequence