Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08470 and BWI76_RS08475 are separated by 3 nucleotides BWI76_RS08475 and BWI76_RS08480 overlap by 1 nucleotides
BWI76_RS08470: BWI76_RS08470 - 3-methylaspartate ammonia-lyase, at 1,792,965 to 1,794,335
_RS08470
BWI76_RS08475: BWI76_RS08475 - methylaspartate ammonia-lyase, at 1,794,339 to 1,795,580
_RS08475
BWI76_RS08480: BWI76_RS08480 - methylaspartate mutase subunit E, at 1,795,580 to 1,797,025
_RS08480
Position (kb)
1794
1795
1796 Strain fitness (log2 ratio)
-2
-1
0
1 at 1793.340 kb on + strand, within BWI76_RS08470 at 1793.490 kb on + strand, within BWI76_RS08470 at 1793.703 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.736 kb on + strand, within BWI76_RS08470 at 1793.860 kb on + strand, within BWI76_RS08470 at 1793.868 kb on - strand, within BWI76_RS08470 at 1794.157 kb on + strand, within BWI76_RS08470 at 1794.196 kb on - strand, within BWI76_RS08470 at 1794.548 kb on - strand, within BWI76_RS08475 at 1794.594 kb on - strand at 1794.646 kb on - strand, within BWI76_RS08475 at 1794.654 kb on - strand at 1794.654 kb on - strand, within BWI76_RS08475 at 1794.729 kb on - strand, within BWI76_RS08475 at 1794.763 kb on + strand, within BWI76_RS08475 at 1794.773 kb on + strand, within BWI76_RS08475 at 1794.773 kb on + strand, within BWI76_RS08475 at 1794.993 kb on - strand, within BWI76_RS08475 at 1795.257 kb on + strand, within BWI76_RS08475 at 1795.258 kb on - strand, within BWI76_RS08475 at 1795.370 kb on - strand, within BWI76_RS08475 at 1795.454 kb on + strand, within BWI76_RS08475 at 1795.622 kb on - strand at 1795.704 kb on - strand at 1795.720 kb on + strand at 1795.835 kb on + strand, within BWI76_RS08480 at 1795.851 kb on - strand, within BWI76_RS08480 at 1795.886 kb on + strand, within BWI76_RS08480 at 1795.894 kb on - strand, within BWI76_RS08480 at 1795.894 kb on - strand, within BWI76_RS08480 at 1795.979 kb on - strand, within BWI76_RS08480 at 1796.394 kb on - strand, within BWI76_RS08480
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 1,793,340 + BWI76_RS08470 0.27 -1.6 1,793,490 + BWI76_RS08470 0.38 +0.4 1,793,703 + BWI76_RS08470 0.54 +0.6 1,793,736 + BWI76_RS08470 0.56 -0.9 1,793,736 + BWI76_RS08470 0.56 -1.0 1,793,736 + BWI76_RS08470 0.56 +0.1 1,793,736 + BWI76_RS08470 0.56 -0.9 1,793,736 + BWI76_RS08470 0.56 +1.7 1,793,860 + BWI76_RS08470 0.65 -1.7 1,793,868 - BWI76_RS08470 0.66 -0.2 1,794,157 + BWI76_RS08470 0.87 +0.7 1,794,196 - BWI76_RS08470 0.90 +0.5 1,794,548 - BWI76_RS08475 0.17 +0.9 1,794,594 - -0.4 1,794,646 - BWI76_RS08475 0.25 -0.3 1,794,654 - +1.1 1,794,654 - BWI76_RS08475 0.25 +0.4 1,794,729 - BWI76_RS08475 0.31 +1.0 1,794,763 + BWI76_RS08475 0.34 +0.3 1,794,773 + BWI76_RS08475 0.35 -0.0 1,794,773 + BWI76_RS08475 0.35 -0.3 1,794,993 - BWI76_RS08475 0.53 -0.7 1,795,257 + BWI76_RS08475 0.74 -1.4 1,795,258 - BWI76_RS08475 0.74 -0.4 1,795,370 - BWI76_RS08475 0.83 -2.0 1,795,454 + BWI76_RS08475 0.90 +0.2 1,795,622 - +0.5 1,795,704 - +0.2 1,795,720 + -0.4 1,795,835 + BWI76_RS08480 0.18 -0.1 1,795,851 - BWI76_RS08480 0.19 +0.3 1,795,886 + BWI76_RS08480 0.21 -0.5 1,795,894 - BWI76_RS08480 0.22 +0.0 1,795,894 - BWI76_RS08480 0.22 -0.6 1,795,979 - BWI76_RS08480 0.28 +0.3 1,796,394 - BWI76_RS08480 0.56 -1.7
Or see this region's nucleotide sequence