Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08265

Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08260 and BWI76_RS08265 are separated by 129 nucleotidesBWI76_RS08265 and BWI76_RS08270 are separated by 291 nucleotidesBWI76_RS08270 and BWI76_RS08275 are separated by 50 nucleotides BWI76_RS08260: BWI76_RS08260 - LysR family transcriptional regulator, at 1,749,079 to 1,750,005 _RS08260 BWI76_RS08265: BWI76_RS08265 - transcriptional repressor, at 1,750,135 to 1,750,587 _RS08265 BWI76_RS08270: BWI76_RS08270 - flavodoxin, at 1,750,879 to 1,751,508 _RS08270 BWI76_RS08275: BWI76_RS08275 - LexA regulated protein, at 1,751,559 to 1,751,852 _RS08275 Position (kb) 1750 1751Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1749.594 kb on + strand, within BWI76_RS08260at 1749.845 kb on - strand, within BWI76_RS08260at 1750.030 kb on - strandat 1750.044 kb on + strandat 1750.688 kb on + strandat 1750.810 kb on + strandat 1751.518 kb on + strandat 1751.526 kb on - strandat 1751.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
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1,749,594 + BWI76_RS08260 0.56 -0.4
1,749,845 - BWI76_RS08260 0.83 +0.7
1,750,030 - +2.2
1,750,044 + -0.9
1,750,688 + +0.1
1,750,810 + -0.4
1,751,518 + -0.1
1,751,526 - -1.0
1,751,571 - -3.2

Or see this region's nucleotide sequence