Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07470 and BWI76_RS07475 are separated by 32 nucleotides BWI76_RS07475 and BWI76_RS07480 are separated by 36 nucleotides BWI76_RS07480 and BWI76_RS07485 are separated by 153 nucleotides
BWI76_RS07470: BWI76_RS07470 - MBL fold metallo-hydrolase, at 1,575,702 to 1,576,802
_RS07470
BWI76_RS07475: BWI76_RS07475 - DNA-binding transcriptional regulator RamA, at 1,576,835 to 1,577,176
_RS07475
BWI76_RS07480: BWI76_RS07480 - TonB-dependent siderophore receptor, at 1,577,213 to 1,579,357
_RS07480
BWI76_RS07485: BWI76_RS07485 - esterase, at 1,579,511 to 1,581,133
_RS07485
Position (kb)
1577
1578
1579
1580 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1576.364 kb on + strand, within BWI76_RS07470 at 1576.519 kb on - strand, within BWI76_RS07470 at 1576.693 kb on + strand at 1576.703 kb on + strand at 1576.801 kb on + strand at 1576.969 kb on + strand, within BWI76_RS07475 at 1577.368 kb on + strand at 1577.598 kb on + strand, within BWI76_RS07480 at 1577.656 kb on - strand, within BWI76_RS07480 at 1577.711 kb on + strand, within BWI76_RS07480 at 1577.711 kb on + strand, within BWI76_RS07480 at 1577.711 kb on + strand, within BWI76_RS07480 at 1577.724 kb on + strand, within BWI76_RS07480 at 1577.724 kb on + strand, within BWI76_RS07480 at 1577.734 kb on + strand, within BWI76_RS07480 at 1577.749 kb on + strand, within BWI76_RS07480 at 1578.311 kb on - strand, within BWI76_RS07480 at 1578.345 kb on - strand, within BWI76_RS07480 at 1578.516 kb on - strand, within BWI76_RS07480 at 1578.624 kb on - strand, within BWI76_RS07480 at 1578.655 kb on - strand, within BWI76_RS07480 at 1578.678 kb on + strand, within BWI76_RS07480 at 1578.983 kb on - strand, within BWI76_RS07480 at 1579.678 kb on + strand, within BWI76_RS07485 at 1579.876 kb on + strand, within BWI76_RS07485 at 1579.926 kb on + strand, within BWI76_RS07485 at 1580.167 kb on + strand, within BWI76_RS07485 at 1580.175 kb on - strand, within BWI76_RS07485 at 1580.238 kb on + strand, within BWI76_RS07485 at 1580.266 kb on - strand, within BWI76_RS07485 at 1580.279 kb on + strand, within BWI76_RS07485 at 1580.314 kb on + strand, within BWI76_RS07485
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 1,576,364 + BWI76_RS07470 0.60 -0.5 1,576,519 - BWI76_RS07470 0.74 +0.6 1,576,693 + +0.1 1,576,703 + +0.5 1,576,801 + -1.9 1,576,969 + BWI76_RS07475 0.39 +0.8 1,577,368 + -1.0 1,577,598 + BWI76_RS07480 0.18 +0.1 1,577,656 - BWI76_RS07480 0.21 -0.3 1,577,711 + BWI76_RS07480 0.23 -0.1 1,577,711 + BWI76_RS07480 0.23 +0.2 1,577,711 + BWI76_RS07480 0.23 +1.0 1,577,724 + BWI76_RS07480 0.24 -0.3 1,577,724 + BWI76_RS07480 0.24 +0.0 1,577,734 + BWI76_RS07480 0.24 +0.4 1,577,749 + BWI76_RS07480 0.25 +0.5 1,578,311 - BWI76_RS07480 0.51 +0.6 1,578,345 - BWI76_RS07480 0.53 +0.4 1,578,516 - BWI76_RS07480 0.61 -0.8 1,578,624 - BWI76_RS07480 0.66 -1.3 1,578,655 - BWI76_RS07480 0.67 +0.1 1,578,678 + BWI76_RS07480 0.68 +1.9 1,578,983 - BWI76_RS07480 0.83 -0.0 1,579,678 + BWI76_RS07485 0.10 -0.3 1,579,876 + BWI76_RS07485 0.22 -0.7 1,579,926 + BWI76_RS07485 0.26 -0.4 1,580,167 + BWI76_RS07485 0.40 -0.0 1,580,175 - BWI76_RS07485 0.41 -0.5 1,580,238 + BWI76_RS07485 0.45 -0.3 1,580,266 - BWI76_RS07485 0.47 -0.1 1,580,279 + BWI76_RS07485 0.47 -0.6 1,580,314 + BWI76_RS07485 0.49 -1.6
Or see this region's nucleotide sequence