Experiment: Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02270 and BWI76_RS02275 are separated by 36 nucleotides BWI76_RS02275 and BWI76_RS02280 are separated by 115 nucleotides BWI76_RS02280 and BWI76_RS02285 are separated by 145 nucleotides
BWI76_RS02270: BWI76_RS02270 - DSBA oxidoreductase, at 466,760 to 467,542
_RS02270
BWI76_RS02275: BWI76_RS02275 - TetR family transcriptional regulator, at 467,579 to 468,175
_RS02275
BWI76_RS02280: BWI76_RS02280 - NAD(P)H dehydrogenase (quinone), at 468,291 to 468,878
_RS02280
BWI76_RS02285: BWI76_RS02285 - hypothetical protein, at 469,024 to 469,419
_RS02285
Position (kb) 467
468
469 Strain fitness (log2 ratio) -2
-1
0
1 at 466.589 kb on + strand at 466.589 kb on + strand at 466.589 kb on + strand at 466.591 kb on - strand at 466.597 kb on - strand at 466.606 kb on - strand at 466.614 kb on + strand at 466.695 kb on + strand at 466.740 kb on - strand at 466.859 kb on + strand, within BWI76_RS02270 at 466.926 kb on - strand, within BWI76_RS02270 at 466.958 kb on + strand, within BWI76_RS02270 at 466.971 kb on - strand, within BWI76_RS02270 at 466.993 kb on - strand, within BWI76_RS02270 at 467.193 kb on - strand, within BWI76_RS02270 at 467.256 kb on - strand, within BWI76_RS02270 at 467.605 kb on - strand at 467.639 kb on - strand, within BWI76_RS02275 at 467.668 kb on - strand, within BWI76_RS02275 at 467.693 kb on + strand, within BWI76_RS02275 at 467.725 kb on + strand at 467.938 kb on - strand, within BWI76_RS02275 at 467.963 kb on - strand, within BWI76_RS02275 at 468.144 kb on - strand at 468.151 kb on - strand at 468.320 kb on + strand at 468.351 kb on - strand, within BWI76_RS02280 at 468.483 kb on - strand, within BWI76_RS02280 at 468.504 kb on - strand, within BWI76_RS02280 at 468.592 kb on + strand, within BWI76_RS02280 at 468.616 kb on + strand, within BWI76_RS02280 at 468.661 kb on - strand, within BWI76_RS02280 at 468.714 kb on - strand, within BWI76_RS02280 at 468.729 kb on - strand, within BWI76_RS02280 at 468.770 kb on + strand, within BWI76_RS02280 at 468.798 kb on - strand, within BWI76_RS02280 at 468.806 kb on - strand, within BWI76_RS02280 at 468.808 kb on + strand, within BWI76_RS02280 at 468.811 kb on - strand, within BWI76_RS02280 at 468.831 kb on - strand at 468.845 kb on - strand at 468.867 kb on + strand at 468.867 kb on - strand at 468.887 kb on + strand at 468.916 kb on + strand at 468.916 kb on + strand at 468.917 kb on + strand at 468.917 kb on + strand at 468.917 kb on + strand at 468.917 kb on + strand at 468.924 kb on - strand at 468.924 kb on - strand at 468.926 kb on + strand at 468.926 kb on + strand at 468.934 kb on - strand at 468.986 kb on - strand at 468.986 kb on - strand at 468.988 kb on - strand at 469.029 kb on - strand at 469.035 kb on + strand at 469.053 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.061 kb on - strand at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.069 kb on - strand, within BWI76_RS02285
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM remove 466,589 + -0.7 466,589 + +0.4 466,589 + -0.6 466,591 - +0.1 466,597 - +0.2 466,606 - +0.1 466,614 + +0.2 466,695 + +0.4 466,740 - +1.1 466,859 + BWI76_RS02270 0.13 +0.6 466,926 - BWI76_RS02270 0.21 -0.0 466,958 + BWI76_RS02270 0.25 -0.4 466,971 - BWI76_RS02270 0.27 +0.3 466,993 - BWI76_RS02270 0.30 -0.0 467,193 - BWI76_RS02270 0.55 +0.3 467,256 - BWI76_RS02270 0.63 -2.1 467,605 - +0.2 467,639 - BWI76_RS02275 0.10 +0.4 467,668 - BWI76_RS02275 0.15 +0.5 467,693 + BWI76_RS02275 0.19 +1.2 467,725 + +0.1 467,938 - BWI76_RS02275 0.60 +0.1 467,963 - BWI76_RS02275 0.64 +0.6 468,144 - +0.3 468,151 - +0.1 468,320 + -0.4 468,351 - BWI76_RS02280 0.10 +1.3 468,483 - BWI76_RS02280 0.33 -0.9 468,504 - BWI76_RS02280 0.36 +0.2 468,592 + BWI76_RS02280 0.51 -0.5 468,616 + BWI76_RS02280 0.55 -0.2 468,661 - BWI76_RS02280 0.63 +0.2 468,714 - BWI76_RS02280 0.72 -1.0 468,729 - BWI76_RS02280 0.74 +1.2 468,770 + BWI76_RS02280 0.81 +0.4 468,798 - BWI76_RS02280 0.86 +0.1 468,806 - BWI76_RS02280 0.88 -0.5 468,808 + BWI76_RS02280 0.88 +0.8 468,811 - BWI76_RS02280 0.88 -2.6 468,831 - +0.4 468,845 - -0.5 468,867 + -0.5 468,867 - -1.8 468,887 + -0.2 468,916 + -0.7 468,916 + +0.1 468,917 + -1.5 468,917 + -1.8 468,917 + -0.5 468,917 + -2.2 468,924 - -0.6 468,924 - -0.5 468,926 + +0.2 468,926 + -1.7 468,934 - -0.6 468,986 - -0.3 468,986 - -1.7 468,988 - -1.5 469,029 - -0.1 469,035 + -2.5 469,053 + -0.9 469,059 + -0.9 469,059 + +1.1 469,059 + +0.7 469,059 + -2.5 469,059 + -1.2 469,059 + +0.0 469,061 - -2.3 469,067 - BWI76_RS02285 0.11 -1.5 469,067 - BWI76_RS02285 0.11 -1.2 469,067 - BWI76_RS02285 0.11 -1.0 469,067 - BWI76_RS02285 0.11 +0.1 469,067 - BWI76_RS02285 0.11 +0.9 469,067 - BWI76_RS02285 0.11 -2.3 469,067 - BWI76_RS02285 0.11 -1.6 469,067 - BWI76_RS02285 0.11 -0.3 469,069 - BWI76_RS02285 0.11 +1.1
Or see this region's nucleotide sequence