Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06090

Experiment: Fungal_growth_media_mCAFEs_v1 with Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06085 and BWI76_RS06090 are separated by 404 nucleotidesBWI76_RS06090 and BWI76_RS06095 are separated by 106 nucleotides BWI76_RS06085: BWI76_RS06085 - hypothetical protein, at 1,278,394 to 1,280,112 _RS06085 BWI76_RS06090: BWI76_RS06090 - delta-aminolevulinic acid dehydratase, at 1,280,517 to 1,281,491 _RS06090 BWI76_RS06095: BWI76_RS06095 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH, at 1,281,598 to 1,282,758 _RS06095 Position (kb) 1280 1281 1282Strain fitness (log2 ratio) -2 -1 0 1at 1279.519 kb on - strand, within BWI76_RS06085at 1279.831 kb on + strand, within BWI76_RS06085at 1279.831 kb on + strand, within BWI76_RS06085at 1279.831 kb on + strand, within BWI76_RS06085at 1279.976 kb on - strandat 1280.071 kb on - strandat 1280.083 kb on - strandat 1280.165 kb on + strandat 1280.371 kb on + strandat 1281.578 kb on + strandat 1282.085 kb on - strand, within BWI76_RS06095at 1282.097 kb on - strand, within BWI76_RS06095at 1282.148 kb on + strand, within BWI76_RS06095at 1282.207 kb on + strand, within BWI76_RS06095at 1282.261 kb on + strand, within BWI76_RS06095at 1282.321 kb on - strand, within BWI76_RS06095at 1282.461 kb on - strand, within BWI76_RS06095

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Aluminum chloride 2 mM
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1,279,519 - BWI76_RS06085 0.65 -1.4
1,279,831 + BWI76_RS06085 0.84 -0.0
1,279,831 + BWI76_RS06085 0.84 +0.8
1,279,831 + BWI76_RS06085 0.84 +0.6
1,279,976 - +0.3
1,280,071 - +0.3
1,280,083 - -0.6
1,280,165 + +0.2
1,280,371 + -2.0
1,281,578 + +0.5
1,282,085 - BWI76_RS06095 0.42 +0.4
1,282,097 - BWI76_RS06095 0.43 -1.5
1,282,148 + BWI76_RS06095 0.47 +0.5
1,282,207 + BWI76_RS06095 0.52 +0.6
1,282,261 + BWI76_RS06095 0.57 +0.3
1,282,321 - BWI76_RS06095 0.62 +0.8
1,282,461 - BWI76_RS06095 0.74 -0.3

Or see this region's nucleotide sequence