Experiment: Fungal_growth_media_mCAFEs_v1 with Aluminum chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01560 and BWI76_RS01565 are separated by 95 nucleotides BWI76_RS01565 and BWI76_RS01570 are separated by 40 nucleotides BWI76_RS01570 and BWI76_RS01575 are separated by 9 nucleotides BWI76_RS01575 and BWI76_RS01580 are separated by 42 nucleotides
BWI76_RS01560: BWI76_RS01560 - Rsd/AlgQ family anti-sigma factor, at 318,172 to 318,669
_RS01560
BWI76_RS01565: BWI76_RS01565 - NADH pyrophosphatase, at 318,765 to 319,538
_RS01565
BWI76_RS01570: BWI76_RS01570 - uroporphyrinogen decarboxylase, at 319,579 to 320,643
_RS01570
BWI76_RS01575: BWI76_RS01575 - endonuclease V, at 320,653 to 321,324
_RS01575
BWI76_RS01580: BWI76_RS01580 - hypothetical protein, at 321,367 to 321,957
_RS01580
Position (kb) 319
320
321 Strain fitness (log2 ratio) -1
0
1 at 318.605 kb on - strand, within BWI76_RS01560 at 318.630 kb on + strand at 318.638 kb on - strand at 318.668 kb on - strand at 318.754 kb on + strand at 319.333 kb on + strand, within BWI76_RS01565 at 319.548 kb on - strand at 320.637 kb on + strand at 320.803 kb on + strand, within BWI76_RS01575 at 320.805 kb on + strand, within BWI76_RS01575 at 320.873 kb on - strand, within BWI76_RS01575 at 320.918 kb on - strand, within BWI76_RS01575 at 321.111 kb on + strand, within BWI76_RS01575 at 321.201 kb on - strand, within BWI76_RS01575 at 321.201 kb on - strand, within BWI76_RS01575 at 321.201 kb on - strand, within BWI76_RS01575 at 321.201 kb on - strand, within BWI76_RS01575 at 321.210 kb on + strand, within BWI76_RS01575 at 321.211 kb on - strand, within BWI76_RS01575 at 321.246 kb on + strand, within BWI76_RS01575 at 321.263 kb on + strand at 321.617 kb on + strand, within BWI76_RS01580 at 321.625 kb on - strand, within BWI76_RS01580
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Aluminum chloride 2 mM remove 318,605 - BWI76_RS01560 0.87 +0.7 318,630 + +0.1 318,638 - -0.6 318,668 - -0.5 318,754 + -0.5 319,333 + BWI76_RS01565 0.73 +0.6 319,548 - -0.6 320,637 + +0.1 320,803 + BWI76_RS01575 0.22 -0.6 320,805 + BWI76_RS01575 0.23 +0.9 320,873 - BWI76_RS01575 0.33 -0.3 320,918 - BWI76_RS01575 0.39 -1.5 321,111 + BWI76_RS01575 0.68 -0.3 321,201 - BWI76_RS01575 0.82 +1.1 321,201 - BWI76_RS01575 0.82 -0.2 321,201 - BWI76_RS01575 0.82 +0.3 321,201 - BWI76_RS01575 0.82 +0.4 321,210 + BWI76_RS01575 0.83 -1.3 321,211 - BWI76_RS01575 0.83 +1.3 321,246 + BWI76_RS01575 0.88 -0.6 321,263 + +0.7 321,617 + BWI76_RS01580 0.42 -0.2 321,625 - BWI76_RS01580 0.44 -0.5
Or see this region's nucleotide sequence