Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05420

Experiment: Vogels_fungal_media 0.1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05410 and BPHYT_RS05415 are separated by 427 nucleotidesBPHYT_RS05415 and BPHYT_RS05420 are separated by 47 nucleotidesBPHYT_RS05420 and BPHYT_RS05425 are separated by 254 nucleotides BPHYT_RS05410: BPHYT_RS05410 - beta-lactamase, at 1,242,100 to 1,243,104 _RS05410 BPHYT_RS05415: BPHYT_RS05415 - 50S ribosomal protein L21, at 1,243,532 to 1,244,005 _RS05415 BPHYT_RS05420: BPHYT_RS05420 - glutathione S-transferase, at 1,244,053 to 1,244,664 _RS05420 BPHYT_RS05425: BPHYT_RS05425 - oxidoreductase, at 1,244,919 to 1,247,021 _RS05425 Position (kb) 1244 1245Strain fitness (log2 ratio) -1 0 1 2at 1243.546 kb on - strandat 1244.118 kb on - strand, within BPHYT_RS05420at 1244.118 kb on - strand, within BPHYT_RS05420at 1244.580 kb on + strand, within BPHYT_RS05420at 1244.655 kb on - strandat 1245.026 kb on - strandat 1245.220 kb on - strand, within BPHYT_RS05425at 1245.505 kb on - strand, within BPHYT_RS05425

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X
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1,243,546 - -0.2
1,244,118 - BPHYT_RS05420 0.11 +0.4
1,244,118 - BPHYT_RS05420 0.11 +2.0
1,244,580 + BPHYT_RS05420 0.86 +0.8
1,244,655 - -0.8
1,245,026 - +0.4
1,245,220 - BPHYT_RS05425 0.14 +0.5
1,245,505 - BPHYT_RS05425 0.28 +0.2

Or see this region's nucleotide sequence