Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27540 and BWI76_RS27545 are separated by 456 nucleotides BWI76_RS27545 and BWI76_RS27550 are separated by 159 nucleotides BWI76_RS27550 and BWI76_RS27555 overlap by 20 nucleotides
BWI76_RS27540: BWI76_RS27540 - glycoside hydrolase, at 5,716,436 to 5,717,815
_RS27540
BWI76_RS27545: BWI76_RS27545 - sugar isomerase, at 5,718,272 to 5,719,003
_RS27545
BWI76_RS27550: BWI76_RS27550 - hypothetical protein, at 5,719,163 to 5,719,837
_RS27550
BWI76_RS27555: BWI76_RS27555 - putative sugar kinase/transcriptional regulator, ATPase domain protein, at 5,719,818 to 5,720,750
_RS27555
Position (kb) 5718
5719
5720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5717.315 kb on + strand, within BWI76_RS27540 at 5717.316 kb on + strand, within BWI76_RS27540 at 5717.405 kb on + strand, within BWI76_RS27540 at 5717.412 kb on + strand, within BWI76_RS27540 at 5717.420 kb on - strand, within BWI76_RS27540 at 5717.422 kb on + strand, within BWI76_RS27540 at 5717.472 kb on + strand, within BWI76_RS27540 at 5717.535 kb on - strand, within BWI76_RS27540 at 5717.574 kb on + strand, within BWI76_RS27540 at 5717.584 kb on + strand, within BWI76_RS27540 at 5717.592 kb on - strand, within BWI76_RS27540 at 5717.620 kb on + strand, within BWI76_RS27540 at 5717.652 kb on + strand, within BWI76_RS27540 at 5717.908 kb on + strand at 5717.956 kb on + strand at 5717.964 kb on + strand at 5717.972 kb on - strand at 5717.974 kb on + strand at 5718.007 kb on + strand at 5718.015 kb on - strand at 5718.044 kb on + strand at 5718.096 kb on - strand at 5718.096 kb on - strand at 5718.469 kb on - strand, within BWI76_RS27545 at 5718.508 kb on - strand, within BWI76_RS27545 at 5718.561 kb on + strand, within BWI76_RS27545 at 5718.571 kb on - strand, within BWI76_RS27545 at 5718.774 kb on + strand, within BWI76_RS27545 at 5718.775 kb on + strand, within BWI76_RS27545 at 5718.881 kb on - strand, within BWI76_RS27545 at 5718.881 kb on - strand, within BWI76_RS27545 at 5718.902 kb on - strand, within BWI76_RS27545 at 5718.927 kb on - strand, within BWI76_RS27545 at 5718.927 kb on - strand, within BWI76_RS27545 at 5718.927 kb on - strand, within BWI76_RS27545 at 5718.927 kb on - strand, within BWI76_RS27545 at 5719.020 kb on - strand at 5719.150 kb on + strand at 5719.150 kb on + strand at 5719.151 kb on + strand at 5719.169 kb on + strand at 5719.176 kb on - strand at 5719.177 kb on - strand at 5719.177 kb on - strand at 5719.466 kb on - strand, within BWI76_RS27550 at 5719.481 kb on - strand, within BWI76_RS27550 at 5719.580 kb on + strand, within BWI76_RS27550 at 5719.580 kb on + strand, within BWI76_RS27550 at 5719.590 kb on - strand, within BWI76_RS27550 at 5719.590 kb on - strand, within BWI76_RS27550 at 5719.789 kb on - strand at 5719.796 kb on - strand at 5719.992 kb on - strand, within BWI76_RS27555
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL remove 5,717,315 + BWI76_RS27540 0.64 +0.0 5,717,316 + BWI76_RS27540 0.64 +0.0 5,717,405 + BWI76_RS27540 0.70 +2.0 5,717,412 + BWI76_RS27540 0.71 -1.2 5,717,420 - BWI76_RS27540 0.71 +0.6 5,717,422 + BWI76_RS27540 0.71 -0.3 5,717,472 + BWI76_RS27540 0.75 +0.4 5,717,535 - BWI76_RS27540 0.80 -0.7 5,717,574 + BWI76_RS27540 0.82 +0.0 5,717,584 + BWI76_RS27540 0.83 +0.5 5,717,592 - BWI76_RS27540 0.84 -0.2 5,717,620 + BWI76_RS27540 0.86 -0.1 5,717,652 + BWI76_RS27540 0.88 -0.9 5,717,908 + +0.3 5,717,956 + -1.4 5,717,964 + -1.0 5,717,972 - -0.0 5,717,974 + -0.6 5,718,007 + +0.2 5,718,015 - -1.1 5,718,044 + -1.7 5,718,096 - -0.4 5,718,096 - -0.2 5,718,469 - BWI76_RS27545 0.27 +0.6 5,718,508 - BWI76_RS27545 0.32 -0.1 5,718,561 + BWI76_RS27545 0.39 -1.9 5,718,571 - BWI76_RS27545 0.41 -0.8 5,718,774 + BWI76_RS27545 0.69 -1.3 5,718,775 + BWI76_RS27545 0.69 +0.3 5,718,881 - BWI76_RS27545 0.83 -0.8 5,718,881 - BWI76_RS27545 0.83 -0.8 5,718,902 - BWI76_RS27545 0.86 -0.6 5,718,927 - BWI76_RS27545 0.89 +1.0 5,718,927 - BWI76_RS27545 0.89 -1.9 5,718,927 - BWI76_RS27545 0.89 -1.1 5,718,927 - BWI76_RS27545 0.89 +0.4 5,719,020 - -2.0 5,719,150 + +1.0 5,719,150 + -3.4 5,719,151 + +0.3 5,719,169 + +0.8 5,719,176 - +0.2 5,719,177 - -1.5 5,719,177 - -1.0 5,719,466 - BWI76_RS27550 0.45 -0.7 5,719,481 - BWI76_RS27550 0.47 -0.0 5,719,580 + BWI76_RS27550 0.62 +0.8 5,719,580 + BWI76_RS27550 0.62 -0.1 5,719,590 - BWI76_RS27550 0.63 +0.1 5,719,590 - BWI76_RS27550 0.63 -0.6 5,719,789 - -0.2 5,719,796 - -0.6 5,719,992 - BWI76_RS27555 0.19 +1.0
Or see this region's nucleotide sequence