Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24385 and BWI76_RS24390 are separated by 24 nucleotides BWI76_RS24390 and BWI76_RS24395 overlap by 4 nucleotides BWI76_RS24395 and BWI76_RS24400 are separated by 195 nucleotides
BWI76_RS24385: BWI76_RS24385 - phosphodiesterase, at 5,083,428 to 5,084,255
_RS24385
BWI76_RS24390: BWI76_RS24390 - hypothetical protein, at 5,084,280 to 5,084,702
_RS24390
BWI76_RS24395: BWI76_RS24395 - ADP-ribose diphosphatase, at 5,084,699 to 5,085,331
_RS24395
BWI76_RS24400: BWI76_RS24400 - outer membrane channel protein TolC, at 5,085,527 to 5,086,975
_RS24400
Position (kb) 5084
5085
5086 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5083.726 kb on - strand, within BWI76_RS24385 at 5083.778 kb on + strand, within BWI76_RS24385 at 5083.849 kb on - strand at 5083.945 kb on + strand, within BWI76_RS24385 at 5084.023 kb on + strand, within BWI76_RS24385 at 5084.183 kb on + strand at 5084.434 kb on - strand, within BWI76_RS24390 at 5084.593 kb on - strand, within BWI76_RS24390 at 5084.767 kb on - strand, within BWI76_RS24395 at 5084.799 kb on + strand, within BWI76_RS24395 at 5084.807 kb on - strand, within BWI76_RS24395 at 5084.953 kb on - strand, within BWI76_RS24395 at 5084.963 kb on - strand at 5084.963 kb on - strand, within BWI76_RS24395 at 5084.971 kb on + strand, within BWI76_RS24395 at 5085.101 kb on - strand, within BWI76_RS24395 at 5085.142 kb on - strand, within BWI76_RS24395 at 5085.195 kb on - strand, within BWI76_RS24395 at 5085.220 kb on + strand, within BWI76_RS24395 at 5085.309 kb on - strand at 5085.316 kb on + strand at 5085.337 kb on - strand at 5085.349 kb on - strand at 5085.462 kb on + strand at 5085.497 kb on + strand at 5085.505 kb on - strand at 5085.555 kb on + strand at 5085.555 kb on + strand at 5085.555 kb on + strand at 5085.563 kb on - strand at 5085.563 kb on - strand at 5085.563 kb on - strand at 5085.563 kb on - strand at 5085.567 kb on - strand at 5085.590 kb on + strand at 5085.633 kb on + strand at 5085.633 kb on + strand at 5085.633 kb on + strand at 5085.641 kb on - strand at 5085.682 kb on + strand, within BWI76_RS24400 at 5085.731 kb on + strand, within BWI76_RS24400 at 5085.731 kb on + strand, within BWI76_RS24400 at 5085.792 kb on + strand, within BWI76_RS24400 at 5085.872 kb on + strand, within BWI76_RS24400 at 5085.961 kb on + strand, within BWI76_RS24400 at 5085.969 kb on - strand, within BWI76_RS24400 at 5086.007 kb on - strand, within BWI76_RS24400 at 5086.142 kb on - strand, within BWI76_RS24400 at 5086.236 kb on - strand, within BWI76_RS24400 at 5086.322 kb on - strand, within BWI76_RS24400
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL remove 5,083,726 - BWI76_RS24385 0.36 -0.6 5,083,778 + BWI76_RS24385 0.42 -3.3 5,083,849 - +1.0 5,083,945 + BWI76_RS24385 0.62 -0.7 5,084,023 + BWI76_RS24385 0.72 +1.0 5,084,183 + -1.2 5,084,434 - BWI76_RS24390 0.36 +0.3 5,084,593 - BWI76_RS24390 0.74 +0.3 5,084,767 - BWI76_RS24395 0.11 +0.8 5,084,799 + BWI76_RS24395 0.16 +0.7 5,084,807 - BWI76_RS24395 0.17 -0.8 5,084,953 - BWI76_RS24395 0.40 +1.6 5,084,963 - +3.8 5,084,963 - BWI76_RS24395 0.42 -0.3 5,084,971 + BWI76_RS24395 0.43 -0.3 5,085,101 - BWI76_RS24395 0.64 -0.0 5,085,142 - BWI76_RS24395 0.70 +1.4 5,085,195 - BWI76_RS24395 0.78 +0.1 5,085,220 + BWI76_RS24395 0.82 -0.1 5,085,309 - +1.1 5,085,316 + -0.0 5,085,337 - +0.1 5,085,349 - -1.3 5,085,462 + -0.4 5,085,497 + +1.1 5,085,505 - -0.0 5,085,555 + -0.0 5,085,555 + +1.0 5,085,555 + -0.0 5,085,563 - -1.3 5,085,563 - -1.6 5,085,563 - -0.6 5,085,563 - -1.1 5,085,567 - -0.6 5,085,590 + -0.6 5,085,633 + -0.0 5,085,633 + -2.0 5,085,633 + +1.0 5,085,641 - -0.3 5,085,682 + BWI76_RS24400 0.11 -2.1 5,085,731 + BWI76_RS24400 0.14 -0.6 5,085,731 + BWI76_RS24400 0.14 +1.0 5,085,792 + BWI76_RS24400 0.18 +2.3 5,085,872 + BWI76_RS24400 0.24 +1.0 5,085,961 + BWI76_RS24400 0.30 +1.0 5,085,969 - BWI76_RS24400 0.31 -2.3 5,086,007 - BWI76_RS24400 0.33 +1.0 5,086,142 - BWI76_RS24400 0.42 +1.0 5,086,236 - BWI76_RS24400 0.49 -0.6 5,086,322 - BWI76_RS24400 0.55 +0.6
Or see this region's nucleotide sequence