Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21180 and BWI76_RS21185 overlap by 10 nucleotides BWI76_RS21185 and BWI76_RS21190 are separated by 124 nucleotides BWI76_RS21190 and BWI76_RS21195 overlap by 4 nucleotides
BWI76_RS21180: BWI76_RS21180 - nickel transporter, at 4,433,883 to 4,434,863
_RS21180
BWI76_RS21185: BWI76_RS21185 - hypothetical protein, at 4,434,854 to 4,435,492
_RS21185
BWI76_RS21190: BWI76_RS21190 - stationary phase inducible protein CsiE, at 4,435,617 to 4,436,894
_RS21190
BWI76_RS21195: BWI76_RS21195 - 3-phenylpropionic acid transporter, at 4,436,891 to 4,438,024
_RS21195
Position (kb)
4435
4436
4437 Strain fitness (log2 ratio)
-2
-1
0
1 at 4434.706 kb on - strand, within BWI76_RS21180 at 4434.898 kb on + strand at 4435.053 kb on + strand, within BWI76_RS21185 at 4435.066 kb on + strand, within BWI76_RS21185 at 4435.126 kb on + strand, within BWI76_RS21185 at 4435.134 kb on - strand, within BWI76_RS21185 at 4435.141 kb on - strand, within BWI76_RS21185 at 4435.311 kb on + strand, within BWI76_RS21185 at 4435.329 kb on - strand, within BWI76_RS21185 at 4435.493 kb on - strand at 4435.677 kb on + strand at 4435.747 kb on - strand, within BWI76_RS21190 at 4435.758 kb on + strand, within BWI76_RS21190 at 4436.107 kb on + strand, within BWI76_RS21190 at 4436.115 kb on - strand, within BWI76_RS21190 at 4436.115 kb on - strand, within BWI76_RS21190 at 4436.127 kb on - strand, within BWI76_RS21190 at 4436.410 kb on - strand, within BWI76_RS21190 at 4436.410 kb on - strand, within BWI76_RS21190 at 4436.554 kb on + strand, within BWI76_RS21190 at 4436.562 kb on - strand, within BWI76_RS21190 at 4436.685 kb on - strand, within BWI76_RS21190 at 4436.698 kb on + strand, within BWI76_RS21190 at 4436.698 kb on + strand, within BWI76_RS21190 at 4436.706 kb on - strand, within BWI76_RS21190 at 4436.780 kb on + strand at 4437.033 kb on - strand, within BWI76_RS21195 at 4437.147 kb on + strand, within BWI76_RS21195 at 4437.434 kb on - strand, within BWI76_RS21195 at 4437.522 kb on - strand, within BWI76_RS21195 at 4437.539 kb on - strand, within BWI76_RS21195 at 4437.577 kb on + strand, within BWI76_RS21195 at 4437.779 kb on + strand, within BWI76_RS21195
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL remove 4,434,706 - BWI76_RS21180 0.84 +0.3 4,434,898 + -0.0 4,435,053 + BWI76_RS21185 0.31 -0.2 4,435,066 + BWI76_RS21185 0.33 -1.3 4,435,126 + BWI76_RS21185 0.43 +0.9 4,435,134 - BWI76_RS21185 0.44 +0.4 4,435,141 - BWI76_RS21185 0.45 +1.6 4,435,311 + BWI76_RS21185 0.72 -0.1 4,435,329 - BWI76_RS21185 0.74 +0.5 4,435,493 - +0.7 4,435,677 + +1.0 4,435,747 - BWI76_RS21190 0.10 +0.3 4,435,758 + BWI76_RS21190 0.11 +1.5 4,436,107 + BWI76_RS21190 0.38 -0.5 4,436,115 - BWI76_RS21190 0.39 -2.4 4,436,115 - BWI76_RS21190 0.39 +0.1 4,436,127 - BWI76_RS21190 0.40 +0.3 4,436,410 - BWI76_RS21190 0.62 +1.5 4,436,410 - BWI76_RS21190 0.62 +0.3 4,436,554 + BWI76_RS21190 0.73 +0.7 4,436,562 - BWI76_RS21190 0.74 +0.0 4,436,685 - BWI76_RS21190 0.84 -0.8 4,436,698 + BWI76_RS21190 0.85 +1.2 4,436,698 + BWI76_RS21190 0.85 +0.5 4,436,706 - BWI76_RS21190 0.85 +0.0 4,436,780 + -0.7 4,437,033 - BWI76_RS21195 0.13 -0.0 4,437,147 + BWI76_RS21195 0.23 +0.5 4,437,434 - BWI76_RS21195 0.48 +0.6 4,437,522 - BWI76_RS21195 0.56 +0.6 4,437,539 - BWI76_RS21195 0.57 +0.8 4,437,577 + BWI76_RS21195 0.60 -0.4 4,437,779 + BWI76_RS21195 0.78 +0.9
Or see this region's nucleotide sequence