Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20790 and BWI76_RS20795 are separated by 11 nucleotides BWI76_RS20795 and BWI76_RS20800 are separated by 114 nucleotides BWI76_RS20800 and BWI76_RS20805 are separated by 36 nucleotides BWI76_RS20805 and BWI76_RS20810 overlap by 4 nucleotides BWI76_RS20810 and BWI76_RS20815 overlap by 4 nucleotides
BWI76_RS20790: BWI76_RS20790 - aldehyde dehydrogenase, at 4,345,900 to 4,347,303
_RS20790
BWI76_RS20795: BWI76_RS20795 - ethanolamine catabolic microcompartment shell protein EutN, at 4,347,315 to 4,347,602
_RS20795
BWI76_RS20800: BWI76_RS20800 - carboxysome shell protein, at 4,347,717 to 4,348,007
_RS20800
BWI76_RS20805: BWI76_RS20805 - phosphate acetyltransferase, at 4,348,044 to 4,349,060
_RS20805
BWI76_RS20810: BWI76_RS20810 - ethanolamine utilization cobalamin adenosyltransferase, at 4,349,057 to 4,349,860
_RS20810
BWI76_RS20815: BWI76_RS20815 - ethanolamine utilization protein EutQ, at 4,349,857 to 4,350,549
_RS20815
Position (kb) 4348
4349
4350 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4347.523 kb on + strand, within BWI76_RS20795 at 4347.955 kb on + strand, within BWI76_RS20800 at 4347.963 kb on - strand, within BWI76_RS20800 at 4347.963 kb on - strand, within BWI76_RS20800 at 4348.572 kb on + strand, within BWI76_RS20805 at 4348.572 kb on + strand, within BWI76_RS20805 at 4348.572 kb on + strand, within BWI76_RS20805 at 4348.910 kb on + strand, within BWI76_RS20805 at 4349.142 kb on + strand, within BWI76_RS20810 at 4349.150 kb on - strand, within BWI76_RS20810 at 4349.150 kb on - strand, within BWI76_RS20810 at 4349.150 kb on - strand, within BWI76_RS20810 at 4349.150 kb on - strand, within BWI76_RS20810 at 4349.196 kb on - strand, within BWI76_RS20810 at 4349.340 kb on + strand, within BWI76_RS20810 at 4349.958 kb on - strand, within BWI76_RS20815 at 4349.963 kb on + strand, within BWI76_RS20815 at 4350.030 kb on + strand, within BWI76_RS20815 at 4350.040 kb on - strand, within BWI76_RS20815
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL remove 4,347,523 + BWI76_RS20795 0.72 +0.2 4,347,955 + BWI76_RS20800 0.82 +1.7 4,347,963 - BWI76_RS20800 0.85 +2.5 4,347,963 - BWI76_RS20800 0.85 +4.0 4,348,572 + BWI76_RS20805 0.52 -0.0 4,348,572 + BWI76_RS20805 0.52 +0.4 4,348,572 + BWI76_RS20805 0.52 -0.5 4,348,910 + BWI76_RS20805 0.85 -0.0 4,349,142 + BWI76_RS20810 0.11 -0.4 4,349,150 - BWI76_RS20810 0.12 +2.3 4,349,150 - BWI76_RS20810 0.12 +2.4 4,349,150 - BWI76_RS20810 0.12 +1.5 4,349,150 - BWI76_RS20810 0.12 +1.7 4,349,196 - BWI76_RS20810 0.17 +4.3 4,349,340 + BWI76_RS20810 0.35 -0.5 4,349,958 - BWI76_RS20815 0.15 +1.4 4,349,963 + BWI76_RS20815 0.15 +1.4 4,350,030 + BWI76_RS20815 0.25 +1.2 4,350,040 - BWI76_RS20815 0.26 +1.2
Or see this region's nucleotide sequence