Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15095

Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15085 and BWI76_RS15090 overlap by 11 nucleotidesBWI76_RS15090 and BWI76_RS15095 are separated by 18 nucleotidesBWI76_RS15095 and BWI76_RS15100 are separated by 29 nucleotides BWI76_RS15085: BWI76_RS15085 - 3-deoxy-D-arabinose-heptulosonic-7-phosphate synthase, at 3,160,014 to 3,161,183 _RS15085 BWI76_RS15090: BWI76_RS15090 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 3,161,173 to 3,161,958 _RS15090 BWI76_RS15095: BWI76_RS15095 - isochorismatase, at 3,161,977 to 3,162,609 _RS15095 BWI76_RS15100: BWI76_RS15100 - phenazine biosynthesis protein PhzE, at 3,162,639 to 3,164,588 _RS15100 Position (kb) 3161 3162 3163Strain fitness (log2 ratio) -1 0 1 2 3 4at 3160.981 kb on + strand, within BWI76_RS15085at 3161.145 kb on - strandat 3161.190 kb on + strandat 3161.200 kb on - strandat 3161.270 kb on - strand, within BWI76_RS15090at 3161.275 kb on + strand, within BWI76_RS15090at 3161.314 kb on - strand, within BWI76_RS15090at 3161.622 kb on + strand, within BWI76_RS15090at 3161.719 kb on - strand, within BWI76_RS15090at 3161.876 kb on + strand, within BWI76_RS15090at 3161.884 kb on - strandat 3161.975 kb on - strandat 3161.991 kb on + strandat 3162.061 kb on - strand, within BWI76_RS15095at 3162.120 kb on - strandat 3162.120 kb on - strand, within BWI76_RS15095at 3162.229 kb on - strand, within BWI76_RS15095at 3162.229 kb on - strand, within BWI76_RS15095at 3162.545 kb on - strand, within BWI76_RS15095at 3162.652 kb on - strandat 3162.720 kb on - strandat 3162.766 kb on + strandat 3163.103 kb on - strand, within BWI76_RS15100at 3163.149 kb on + strand, within BWI76_RS15100at 3163.200 kb on - strandat 3163.230 kb on - strand, within BWI76_RS15100at 3163.297 kb on + strand, within BWI76_RS15100at 3163.451 kb on + strand, within BWI76_RS15100at 3163.491 kb on + strand, within BWI76_RS15100at 3163.513 kb on + strand, within BWI76_RS15100at 3163.572 kb on - strand, within BWI76_RS15100

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
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3,160,981 + BWI76_RS15085 0.83 +0.6
3,161,145 - +1.0
3,161,190 + +1.4
3,161,200 - +1.0
3,161,270 - BWI76_RS15090 0.12 -0.5
3,161,275 + BWI76_RS15090 0.13 +1.3
3,161,314 - BWI76_RS15090 0.18 +0.3
3,161,622 + BWI76_RS15090 0.57 +0.8
3,161,719 - BWI76_RS15090 0.69 -0.0
3,161,876 + BWI76_RS15090 0.89 +1.1
3,161,884 - +1.0
3,161,975 - -1.7
3,161,991 + -0.0
3,162,061 - BWI76_RS15095 0.13 -0.2
3,162,120 - -0.0
3,162,120 - BWI76_RS15095 0.23 +0.3
3,162,229 - BWI76_RS15095 0.40 -0.2
3,162,229 - BWI76_RS15095 0.40 -0.4
3,162,545 - BWI76_RS15095 0.90 -1.0
3,162,652 - -0.2
3,162,720 - -0.3
3,162,766 + -0.7
3,163,103 - BWI76_RS15100 0.24 +0.2
3,163,149 + BWI76_RS15100 0.26 -0.0
3,163,200 - -0.6
3,163,230 - BWI76_RS15100 0.30 -0.0
3,163,297 + BWI76_RS15100 0.34 +1.3
3,163,451 + BWI76_RS15100 0.42 +4.0
3,163,491 + BWI76_RS15100 0.44 -0.4
3,163,513 + BWI76_RS15100 0.45 +0.5
3,163,572 - BWI76_RS15100 0.48 -1.6

Or see this region's nucleotide sequence