Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12830 and BWI76_RS12835 are separated by 23 nucleotides BWI76_RS12835 and BWI76_RS12840 are separated by 27 nucleotides BWI76_RS12840 and BWI76_RS12845 are separated by 486 nucleotides
BWI76_RS12830: BWI76_RS12830 - flagellar motor switch protein FliY, at 2,673,624 to 2,674,454
_RS12830
BWI76_RS12835: BWI76_RS12835 - restriction endonuclease subunit S, at 2,674,478 to 2,675,350
_RS12835
BWI76_RS12840: BWI76_RS12840 - amino acid ABC transporter permease/ATP-binding protein, at 2,675,378 to 2,676,898
_RS12840
BWI76_RS12845: BWI76_RS12845 - LysR family transcriptional regulator, at 2,677,385 to 2,678,302
_RS12845
Position (kb)
2675
2676
2677 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2674.382 kb on - strand at 2674.421 kb on + strand at 2674.667 kb on - strand, within BWI76_RS12835 at 2674.678 kb on - strand, within BWI76_RS12835 at 2674.855 kb on - strand, within BWI76_RS12835 at 2674.992 kb on - strand, within BWI76_RS12835 at 2675.088 kb on - strand, within BWI76_RS12835 at 2675.189 kb on + strand, within BWI76_RS12835 at 2675.572 kb on - strand, within BWI76_RS12840 at 2675.688 kb on + strand, within BWI76_RS12840 at 2675.688 kb on + strand, within BWI76_RS12840 at 2675.816 kb on + strand, within BWI76_RS12840 at 2675.977 kb on + strand, within BWI76_RS12840 at 2675.977 kb on + strand, within BWI76_RS12840 at 2676.009 kb on + strand, within BWI76_RS12840 at 2676.312 kb on + strand, within BWI76_RS12840 at 2676.320 kb on - strand, within BWI76_RS12840 at 2676.587 kb on + strand, within BWI76_RS12840 at 2676.587 kb on + strand, within BWI76_RS12840 at 2676.595 kb on - strand, within BWI76_RS12840 at 2676.612 kb on + strand at 2676.620 kb on - strand, within BWI76_RS12840 at 2676.665 kb on + strand at 2676.702 kb on - strand, within BWI76_RS12840 at 2676.743 kb on - strand at 2676.787 kb on + strand at 2676.794 kb on + strand at 2676.801 kb on + strand at 2676.837 kb on - strand at 2676.839 kb on - strand at 2676.839 kb on - strand at 2676.866 kb on - strand at 2676.871 kb on - strand at 2676.876 kb on - strand at 2676.904 kb on + strand at 2676.946 kb on + strand at 2676.946 kb on + strand at 2676.968 kb on + strand at 2676.976 kb on - strand at 2676.976 kb on - strand at 2676.981 kb on - strand at 2676.982 kb on - strand at 2676.984 kb on + strand at 2676.985 kb on + strand at 2676.985 kb on + strand at 2676.985 kb on + strand at 2676.985 kb on + strand at 2676.985 kb on + strand at 2676.985 kb on + strand at 2676.987 kb on - strand at 2676.987 kb on - strand at 2676.988 kb on - strand at 2676.988 kb on - strand at 2676.993 kb on - strand at 2676.994 kb on - strand at 2676.999 kb on - strand at 2676.999 kb on - strand at 2677.001 kb on + strand at 2677.007 kb on - strand at 2677.169 kb on - strand at 2677.171 kb on + strand at 2677.198 kb on + strand at 2677.204 kb on + strand at 2677.211 kb on + strand at 2677.219 kb on - strand at 2677.293 kb on - strand at 2677.293 kb on - strand at 2677.470 kb on + strand at 2677.491 kb on + strand, within BWI76_RS12845 at 2677.563 kb on - strand, within BWI76_RS12845 at 2677.565 kb on - strand, within BWI76_RS12845 at 2677.565 kb on - strand, within BWI76_RS12845 at 2677.570 kb on - strand, within BWI76_RS12845 at 2677.768 kb on - strand, within BWI76_RS12845 at 2677.800 kb on - strand, within BWI76_RS12845 at 2677.800 kb on - strand, within BWI76_RS12845 at 2677.849 kb on + strand at 2677.873 kb on + strand at 2677.891 kb on + strand, within BWI76_RS12845 at 2677.891 kb on + strand, within BWI76_RS12845 at 2677.891 kb on + strand at 2677.891 kb on + strand, within BWI76_RS12845 at 2677.891 kb on + strand, within BWI76_RS12845 at 2677.891 kb on + strand, within BWI76_RS12845 at 2677.891 kb on + strand, within BWI76_RS12845 at 2677.891 kb on + strand, within BWI76_RS12845 at 2677.891 kb on + strand, within BWI76_RS12845
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL remove 2,674,382 - -0.7 2,674,421 + -0.2 2,674,667 - BWI76_RS12835 0.22 +0.6 2,674,678 - BWI76_RS12835 0.23 +0.4 2,674,855 - BWI76_RS12835 0.43 -0.4 2,674,992 - BWI76_RS12835 0.59 -1.6 2,675,088 - BWI76_RS12835 0.70 -0.3 2,675,189 + BWI76_RS12835 0.81 -0.1 2,675,572 - BWI76_RS12840 0.13 +0.5 2,675,688 + BWI76_RS12840 0.20 -1.6 2,675,688 + BWI76_RS12840 0.20 +1.2 2,675,816 + BWI76_RS12840 0.29 +0.2 2,675,977 + BWI76_RS12840 0.39 +0.1 2,675,977 + BWI76_RS12840 0.39 +0.1 2,676,009 + BWI76_RS12840 0.41 +0.8 2,676,312 + BWI76_RS12840 0.61 +0.9 2,676,320 - BWI76_RS12840 0.62 +0.2 2,676,587 + BWI76_RS12840 0.79 +0.2 2,676,587 + BWI76_RS12840 0.79 -0.3 2,676,595 - BWI76_RS12840 0.80 +0.8 2,676,612 + -1.4 2,676,620 - BWI76_RS12840 0.82 +1.5 2,676,665 + -0.0 2,676,702 - BWI76_RS12840 0.87 +1.2 2,676,743 - -0.0 2,676,787 + +1.1 2,676,794 + +0.6 2,676,801 + -1.5 2,676,837 - -1.8 2,676,839 - -0.7 2,676,839 - -0.5 2,676,866 - -1.6 2,676,871 - +0.8 2,676,876 - -2.4 2,676,904 + +3.0 2,676,946 + -0.0 2,676,946 + -0.2 2,676,968 + -2.0 2,676,976 - +0.2 2,676,976 - -0.0 2,676,981 - +0.5 2,676,982 - -0.5 2,676,984 + -1.9 2,676,985 + -1.3 2,676,985 + -1.2 2,676,985 + +1.0 2,676,985 + -0.0 2,676,985 + -0.6 2,676,985 + -0.0 2,676,987 - +0.7 2,676,987 - +0.6 2,676,988 - -1.0 2,676,988 - +1.0 2,676,993 - +0.4 2,676,994 - +1.8 2,676,999 - +1.6 2,676,999 - -0.7 2,677,001 + +1.0 2,677,007 - +0.1 2,677,169 - +1.3 2,677,171 + -2.6 2,677,198 + +1.3 2,677,204 + -1.2 2,677,211 + -0.0 2,677,219 - -0.0 2,677,293 - +2.0 2,677,293 - -0.6 2,677,470 + -2.0 2,677,491 + BWI76_RS12845 0.12 +1.6 2,677,563 - BWI76_RS12845 0.19 +0.1 2,677,565 - BWI76_RS12845 0.20 -0.1 2,677,565 - BWI76_RS12845 0.20 -1.0 2,677,570 - BWI76_RS12845 0.20 +1.0 2,677,768 - BWI76_RS12845 0.42 +0.8 2,677,800 - BWI76_RS12845 0.45 -1.0 2,677,800 - BWI76_RS12845 0.45 +1.0 2,677,849 + +1.6 2,677,873 + +1.0 2,677,891 + BWI76_RS12845 0.55 -0.0 2,677,891 + BWI76_RS12845 0.55 -0.0 2,677,891 + +2.2 2,677,891 + BWI76_RS12845 0.55 +0.1 2,677,891 + BWI76_RS12845 0.55 -0.3 2,677,891 + BWI76_RS12845 0.55 -2.9 2,677,891 + BWI76_RS12845 0.55 -2.0 2,677,891 + BWI76_RS12845 0.55 -1.0 2,677,891 + BWI76_RS12845 0.55 -0.6
Or see this region's nucleotide sequence