Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10470

Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10465 and BWI76_RS10470 are separated by 261 nucleotidesBWI76_RS10470 and BWI76_RS10475 are separated by 23 nucleotides BWI76_RS10465: BWI76_RS10465 - hypothetical protein, at 2,210,969 to 2,211,493 _RS10465 BWI76_RS10470: BWI76_RS10470 - iron ABC transporter substrate-binding protein, at 2,211,755 to 2,212,771 _RS10470 BWI76_RS10475: BWI76_RS10475 - binding-protein-dependent transport system inner membrane protein, at 2,212,795 to 2,214,369 _RS10475 Position (kb) 2211 2212 2213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2210.910 kb on - strandat 2210.924 kb on - strandat 2210.939 kb on + strandat 2210.940 kb on + strandat 2210.945 kb on + strandat 2210.953 kb on - strandat 2210.958 kb on - strandat 2210.963 kb on + strandat 2210.963 kb on + strandat 2210.966 kb on - strandat 2210.971 kb on - strandat 2210.971 kb on - strandat 2210.971 kb on - strandat 2210.988 kb on + strandat 2210.988 kb on + strandat 2211.011 kb on + strandat 2211.119 kb on + strand, within BWI76_RS10465at 2211.192 kb on - strand, within BWI76_RS10465at 2211.288 kb on + strand, within BWI76_RS10465at 2211.322 kb on + strand, within BWI76_RS10465at 2211.330 kb on - strand, within BWI76_RS10465at 2211.383 kb on - strand, within BWI76_RS10465at 2211.467 kb on - strandat 2211.488 kb on + strandat 2211.491 kb on - strandat 2211.500 kb on + strandat 2211.501 kb on + strandat 2211.501 kb on + strandat 2211.501 kb on + strandat 2211.508 kb on - strandat 2211.508 kb on - strandat 2211.508 kb on - strandat 2211.509 kb on - strandat 2211.509 kb on - strandat 2211.509 kb on - strandat 2211.601 kb on + strandat 2211.612 kb on + strandat 2211.612 kb on + strandat 2211.612 kb on + strandat 2211.616 kb on + strandat 2211.620 kb on - strandat 2211.682 kb on - strandat 2211.693 kb on + strandat 2211.701 kb on - strandat 2211.718 kb on + strandat 2211.718 kb on + strandat 2211.718 kb on + strandat 2211.718 kb on + strandat 2211.724 kb on + strandat 2211.726 kb on - strandat 2211.726 kb on - strandat 2211.728 kb on - strandat 2211.738 kb on + strandat 2211.738 kb on + strandat 2211.738 kb on + strandat 2211.745 kb on + strandat 2211.746 kb on - strandat 2211.753 kb on - strandat 2211.929 kb on - strand, within BWI76_RS10470at 2211.937 kb on + strand, within BWI76_RS10470at 2211.945 kb on - strand, within BWI76_RS10470at 2212.080 kb on + strand, within BWI76_RS10470at 2212.687 kb on + strandat 2212.801 kb on + strandat 2212.889 kb on + strandat 2213.006 kb on + strand, within BWI76_RS10475at 2213.299 kb on + strand, within BWI76_RS10475at 2213.357 kb on - strand, within BWI76_RS10475

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
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2,210,910 - -0.3
2,210,924 - +1.0
2,210,939 + -1.0
2,210,940 + +0.5
2,210,945 + +0.4
2,210,953 - +2.3
2,210,958 - +1.8
2,210,963 + -1.8
2,210,963 + -2.0
2,210,966 - +0.0
2,210,971 - -0.3
2,210,971 - -1.0
2,210,971 - +1.3
2,210,988 + -1.6
2,210,988 + -1.6
2,211,011 + -2.0
2,211,119 + BWI76_RS10465 0.29 -0.6
2,211,192 - BWI76_RS10465 0.42 +0.4
2,211,288 + BWI76_RS10465 0.61 -1.2
2,211,322 + BWI76_RS10465 0.67 -0.2
2,211,330 - BWI76_RS10465 0.69 -1.6
2,211,383 - BWI76_RS10465 0.79 -1.3
2,211,467 - -0.0
2,211,488 + -1.7
2,211,491 - +0.2
2,211,500 + +2.3
2,211,501 + -1.0
2,211,501 + -0.6
2,211,501 + -1.6
2,211,508 - -0.6
2,211,508 - -1.4
2,211,508 - -1.6
2,211,509 - +0.8
2,211,509 - -2.1
2,211,509 - -0.6
2,211,601 + -1.1
2,211,612 + -1.4
2,211,612 + -0.3
2,211,612 + -0.2
2,211,616 + -1.1
2,211,620 - -2.9
2,211,682 - -3.0
2,211,693 + +1.0
2,211,701 - -2.9
2,211,718 + -1.6
2,211,718 + -0.6
2,211,718 + -2.6
2,211,718 + +1.5
2,211,724 + +1.0
2,211,726 - -1.3
2,211,726 - -2.4
2,211,728 - -3.5
2,211,738 + +0.8
2,211,738 + -0.4
2,211,738 + -1.6
2,211,745 + -1.6
2,211,746 - -0.4
2,211,753 - -1.7
2,211,929 - BWI76_RS10470 0.17 -0.6
2,211,937 + BWI76_RS10470 0.18 -1.6
2,211,945 - BWI76_RS10470 0.19 -1.1
2,212,080 + BWI76_RS10470 0.32 +0.3
2,212,687 + -1.1
2,212,801 + +0.6
2,212,889 + -1.0
2,213,006 + BWI76_RS10475 0.13 -0.9
2,213,299 + BWI76_RS10475 0.32 -0.2
2,213,357 - BWI76_RS10475 0.36 -2.3

Or see this region's nucleotide sequence