Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05630

Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05620 and BWI76_RS05625 are separated by 252 nucleotidesBWI76_RS05625 and BWI76_RS05630 are separated by 40 nucleotidesBWI76_RS05630 and BWI76_RS05635 are separated by 139 nucleotides BWI76_RS05620: BWI76_RS05620 - NAD-dependent succinate-semialdehyde dehydrogenase, at 1,178,560 to 1,180,008 _RS05620 BWI76_RS05625: BWI76_RS05625 - Zn-finger protein, at 1,180,261 to 1,180,512 _RS05625 BWI76_RS05630: BWI76_RS05630 - TonB-dependent siderophore receptor, at 1,180,553 to 1,182,643 _RS05630 BWI76_RS05635: BWI76_RS05635 - AraC family transcriptional regulator, at 1,182,783 to 1,183,775 _RS05635 Position (kb) 1180 1181 1182 1183Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1179.783 kb on + strand, within BWI76_RS05620at 1179.859 kb on + strand, within BWI76_RS05620at 1180.028 kb on - strandat 1180.062 kb on + strandat 1180.371 kb on + strand, within BWI76_RS05625at 1180.659 kb on - strandat 1180.702 kb on + strandat 1180.710 kb on - strandat 1180.729 kb on + strandat 1180.851 kb on + strand, within BWI76_RS05630at 1180.941 kb on - strand, within BWI76_RS05630at 1181.060 kb on + strand, within BWI76_RS05630at 1181.085 kb on + strand, within BWI76_RS05630at 1181.338 kb on - strand, within BWI76_RS05630at 1181.525 kb on + strand, within BWI76_RS05630at 1181.538 kb on - strand, within BWI76_RS05630at 1181.653 kb on + strand, within BWI76_RS05630at 1181.730 kb on - strand, within BWI76_RS05630at 1181.992 kb on + strand, within BWI76_RS05630at 1182.082 kb on + strand, within BWI76_RS05630at 1182.090 kb on - strand, within BWI76_RS05630at 1182.219 kb on - strand, within BWI76_RS05630at 1182.270 kb on - strand, within BWI76_RS05630at 1182.315 kb on + strand, within BWI76_RS05630at 1182.700 kb on + strandat 1182.702 kb on + strandat 1182.708 kb on - strandat 1182.708 kb on - strandat 1182.708 kb on - strandat 1182.900 kb on - strand, within BWI76_RS05635at 1182.971 kb on - strand, within BWI76_RS05635at 1183.036 kb on - strand, within BWI76_RS05635at 1183.148 kb on + strand, within BWI76_RS05635at 1183.228 kb on - strand, within BWI76_RS05635at 1183.559 kb on - strand, within BWI76_RS05635at 1183.592 kb on + strand, within BWI76_RS05635

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
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1,179,783 + BWI76_RS05620 0.84 -0.2
1,179,859 + BWI76_RS05620 0.90 +2.5
1,180,028 - -1.6
1,180,062 + -0.6
1,180,371 + BWI76_RS05625 0.44 -0.0
1,180,659 - +0.5
1,180,702 + +0.8
1,180,710 - +0.3
1,180,729 + -0.4
1,180,851 + BWI76_RS05630 0.14 -0.4
1,180,941 - BWI76_RS05630 0.19 -0.5
1,181,060 + BWI76_RS05630 0.24 +1.5
1,181,085 + BWI76_RS05630 0.25 -0.0
1,181,338 - BWI76_RS05630 0.38 -1.9
1,181,525 + BWI76_RS05630 0.46 -3.6
1,181,538 - BWI76_RS05630 0.47 +0.2
1,181,653 + BWI76_RS05630 0.53 -0.5
1,181,730 - BWI76_RS05630 0.56 +1.0
1,181,992 + BWI76_RS05630 0.69 -0.7
1,182,082 + BWI76_RS05630 0.73 -0.7
1,182,090 - BWI76_RS05630 0.74 -0.1
1,182,219 - BWI76_RS05630 0.80 -0.7
1,182,270 - BWI76_RS05630 0.82 -0.4
1,182,315 + BWI76_RS05630 0.84 +0.1
1,182,700 + -1.9
1,182,702 + -3.8
1,182,708 - +1.0
1,182,708 - -0.4
1,182,708 - -1.0
1,182,900 - BWI76_RS05635 0.12 +0.4
1,182,971 - BWI76_RS05635 0.19 +0.2
1,183,036 - BWI76_RS05635 0.25 +0.2
1,183,148 + BWI76_RS05635 0.37 -0.2
1,183,228 - BWI76_RS05635 0.45 +0.4
1,183,559 - BWI76_RS05635 0.78 +0.2
1,183,592 + BWI76_RS05635 0.81 -0.5

Or see this region's nucleotide sequence