Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03560

Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03550 and BWI76_RS03555 are separated by 3 nucleotidesBWI76_RS03555 and BWI76_RS03560 are separated by 12 nucleotidesBWI76_RS03560 and BWI76_RS03565 overlap by 4 nucleotidesBWI76_RS03565 and BWI76_RS03570 are separated by 12 nucleotides BWI76_RS03550: BWI76_RS03550 - QacE family quaternary ammonium compound efflux SMR transporter, at 736,261 to 736,680 _RS03550 BWI76_RS03555: BWI76_RS03555 - hypothetical protein, at 736,684 to 737,385 _RS03555 BWI76_RS03560: BWI76_RS03560 - propanediol utilization phosphotransacylase, at 737,398 to 738,018 _RS03560 BWI76_RS03565: BWI76_RS03565 - BMC domain-containing protein, at 738,015 to 738,443 _RS03565 BWI76_RS03570: BWI76_RS03570 - choline TMA-lyase-activating enzyme, at 738,456 to 739,397 _RS03570 Position (kb) 737 738 739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 736.457 kb on - strand, within BWI76_RS03550at 736.478 kb on + strand, within BWI76_RS03550at 736.478 kb on + strand, within BWI76_RS03550at 736.478 kb on + strand, within BWI76_RS03550at 736.491 kb on - strand, within BWI76_RS03550at 736.491 kb on - strand, within BWI76_RS03550at 736.509 kb on - strand, within BWI76_RS03550at 736.548 kb on - strand, within BWI76_RS03550at 736.608 kb on + strand, within BWI76_RS03550at 736.769 kb on + strand, within BWI76_RS03555at 736.822 kb on - strand, within BWI76_RS03555at 736.958 kb on + strand, within BWI76_RS03555at 736.958 kb on + strand, within BWI76_RS03555at 737.080 kb on - strand, within BWI76_RS03555at 737.148 kb on + strand, within BWI76_RS03555at 737.150 kb on + strand, within BWI76_RS03555at 737.150 kb on + strand, within BWI76_RS03555at 737.244 kb on + strand, within BWI76_RS03555at 737.325 kb on - strandat 737.408 kb on + strandat 737.746 kb on - strand, within BWI76_RS03560at 737.830 kb on + strand, within BWI76_RS03560at 737.830 kb on + strand, within BWI76_RS03560at 737.838 kb on - strand, within BWI76_RS03560at 737.838 kb on - strand, within BWI76_RS03560at 737.890 kb on - strand, within BWI76_RS03560at 738.014 kb on - strandat 738.029 kb on - strandat 738.092 kb on + strand, within BWI76_RS03565at 738.179 kb on - strand, within BWI76_RS03565at 738.179 kb on - strand, within BWI76_RS03565at 738.209 kb on + strand, within BWI76_RS03565at 738.229 kb on + strand, within BWI76_RS03565at 738.292 kb on + strand, within BWI76_RS03565at 738.357 kb on + strand, within BWI76_RS03565at 738.393 kb on - strand, within BWI76_RS03565at 738.513 kb on + strandat 738.513 kb on + strandat 738.513 kb on + strandat 738.513 kb on + strandat 738.521 kb on - strandat 738.553 kb on + strand, within BWI76_RS03570at 738.553 kb on + strand, within BWI76_RS03570at 738.561 kb on - strand, within BWI76_RS03570at 738.561 kb on - strand, within BWI76_RS03570at 738.592 kb on + strand, within BWI76_RS03570at 738.596 kb on + strand, within BWI76_RS03570at 738.604 kb on - strand, within BWI76_RS03570at 738.676 kb on + strand, within BWI76_RS03570at 738.697 kb on - strandat 738.744 kb on - strand, within BWI76_RS03570at 738.748 kb on + strand, within BWI76_RS03570at 738.757 kb on - strand, within BWI76_RS03570at 738.757 kb on - strand, within BWI76_RS03570at 738.801 kb on - strand, within BWI76_RS03570at 738.846 kb on - strand, within BWI76_RS03570at 738.846 kb on - strand, within BWI76_RS03570at 738.875 kb on + strand, within BWI76_RS03570at 738.880 kb on + strand, within BWI76_RS03570at 738.886 kb on - strand, within BWI76_RS03570at 738.904 kb on + strand, within BWI76_RS03570at 738.904 kb on + strand, within BWI76_RS03570at 738.909 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.912 kb on - strand, within BWI76_RS03570at 738.945 kb on + strand, within BWI76_RS03570at 738.962 kb on + strand, within BWI76_RS03570at 738.962 kb on + strand, within BWI76_RS03570

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
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736,457 - BWI76_RS03550 0.47 -0.3
736,478 + BWI76_RS03550 0.52 +1.6
736,478 + BWI76_RS03550 0.52 -0.5
736,478 + BWI76_RS03550 0.52 +0.4
736,491 - BWI76_RS03550 0.55 +0.1
736,491 - BWI76_RS03550 0.55 +0.3
736,509 - BWI76_RS03550 0.59 +0.1
736,548 - BWI76_RS03550 0.68 -1.1
736,608 + BWI76_RS03550 0.83 +0.3
736,769 + BWI76_RS03555 0.12 -0.1
736,822 - BWI76_RS03555 0.20 +0.1
736,958 + BWI76_RS03555 0.39 +0.1
736,958 + BWI76_RS03555 0.39 -0.3
737,080 - BWI76_RS03555 0.56 +0.8
737,148 + BWI76_RS03555 0.66 -0.4
737,150 + BWI76_RS03555 0.66 -1.5
737,150 + BWI76_RS03555 0.66 -1.2
737,244 + BWI76_RS03555 0.80 +0.9
737,325 - +0.8
737,408 + +0.7
737,746 - BWI76_RS03560 0.56 +2.3
737,830 + BWI76_RS03560 0.70 -0.3
737,830 + BWI76_RS03560 0.70 +0.8
737,838 - BWI76_RS03560 0.71 +0.1
737,838 - BWI76_RS03560 0.71 +0.7
737,890 - BWI76_RS03560 0.79 +1.9
738,014 - -0.1
738,029 - +1.0
738,092 + BWI76_RS03565 0.18 -0.2
738,179 - BWI76_RS03565 0.38 +0.6
738,179 - BWI76_RS03565 0.38 +0.5
738,209 + BWI76_RS03565 0.45 +0.5
738,229 + BWI76_RS03565 0.50 +0.2
738,292 + BWI76_RS03565 0.65 -0.5
738,357 + BWI76_RS03565 0.80 +0.2
738,393 - BWI76_RS03565 0.88 +0.6
738,513 + -0.3
738,513 + +1.3
738,513 + -0.0
738,513 + +0.7
738,521 - +0.9
738,553 + BWI76_RS03570 0.10 -0.4
738,553 + BWI76_RS03570 0.10 -3.1
738,561 - BWI76_RS03570 0.11 -1.3
738,561 - BWI76_RS03570 0.11 +2.5
738,592 + BWI76_RS03570 0.14 -0.4
738,596 + BWI76_RS03570 0.15 -0.4
738,604 - BWI76_RS03570 0.16 +0.9
738,676 + BWI76_RS03570 0.23 -0.1
738,697 - -0.5
738,744 - BWI76_RS03570 0.31 +0.4
738,748 + BWI76_RS03570 0.31 -4.1
738,757 - BWI76_RS03570 0.32 +0.4
738,757 - BWI76_RS03570 0.32 +0.7
738,801 - BWI76_RS03570 0.37 +0.8
738,846 - BWI76_RS03570 0.41 -0.1
738,846 - BWI76_RS03570 0.41 -0.5
738,875 + BWI76_RS03570 0.44 +0.5
738,880 + BWI76_RS03570 0.45 -0.5
738,886 - BWI76_RS03570 0.46 -1.3
738,904 + BWI76_RS03570 0.48 -0.3
738,904 + BWI76_RS03570 0.48 -0.0
738,909 - BWI76_RS03570 0.48 +0.5
738,912 - BWI76_RS03570 0.48 -0.9
738,912 - BWI76_RS03570 0.48 +1.0
738,912 - BWI76_RS03570 0.48 +0.8
738,912 - BWI76_RS03570 0.48 +0.6
738,945 + BWI76_RS03570 0.52 +0.2
738,962 + BWI76_RS03570 0.54 +0.6
738,962 + BWI76_RS03570 0.54 -0.4

Or see this region's nucleotide sequence