Experiment: Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00845 and BWI76_RS00850 are separated by 9 nucleotides BWI76_RS00850 and BWI76_RS00855 are separated by 77 nucleotides BWI76_RS00855 and BWI76_RS00860 are separated by 31 nucleotides BWI76_RS00860 and BWI76_RS00865 overlap by 1 nucleotides
BWI76_RS00845: BWI76_RS00845 - N-acetyl-gamma-glutamyl-phosphate reductase, at 174,921 to 175,925
_RS00845
BWI76_RS00850: BWI76_RS00850 - acetylglutamate kinase, at 175,935 to 176,708
_RS00850
BWI76_RS00855: BWI76_RS00855 - argininosuccinate lyase, at 176,786 to 178,159
_RS00855
BWI76_RS00860: BWI76_RS00860 - hypothetical protein, at 178,191 to 178,430
_RS00860
BWI76_RS00865: BWI76_RS00865 - DNA-binding transcriptional regulator OxyR, at 178,430 to 179,347
_RS00865
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 175.803 kb on + strand, within BWI76_RS00845 at 175.825 kb on - strand at 176.129 kb on + strand, within BWI76_RS00850 at 176.171 kb on + strand, within BWI76_RS00850 at 176.235 kb on - strand, within BWI76_RS00850 at 176.263 kb on + strand, within BWI76_RS00850 at 176.350 kb on + strand, within BWI76_RS00850 at 176.350 kb on + strand, within BWI76_RS00850 at 176.358 kb on - strand, within BWI76_RS00850 at 176.583 kb on - strand, within BWI76_RS00850 at 176.612 kb on - strand, within BWI76_RS00850 at 176.652 kb on + strand at 176.655 kb on - strand at 176.669 kb on + strand at 176.669 kb on + strand at 176.737 kb on + strand at 176.861 kb on + strand at 176.876 kb on + strand at 176.917 kb on + strand at 176.966 kb on + strand, within BWI76_RS00855 at 176.994 kb on + strand, within BWI76_RS00855 at 177.129 kb on - strand, within BWI76_RS00855 at 177.132 kb on + strand, within BWI76_RS00855 at 177.164 kb on + strand, within BWI76_RS00855 at 177.231 kb on + strand, within BWI76_RS00855 at 177.375 kb on + strand, within BWI76_RS00855 at 177.458 kb on + strand, within BWI76_RS00855 at 177.466 kb on - strand, within BWI76_RS00855 at 177.598 kb on + strand, within BWI76_RS00855 at 177.712 kb on + strand, within BWI76_RS00855 at 177.719 kb on - strand, within BWI76_RS00855 at 177.744 kb on - strand, within BWI76_RS00855 at 178.145 kb on - strand at 178.161 kb on - strand at 178.161 kb on - strand at 178.175 kb on + strand at 178.551 kb on - strand, within BWI76_RS00865 at 178.618 kb on - strand, within BWI76_RS00865 at 178.761 kb on - strand, within BWI76_RS00865 at 178.943 kb on + strand, within BWI76_RS00865 at 179.153 kb on + strand, within BWI76_RS00865
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL remove 175,803 + BWI76_RS00845 0.88 -4.6 175,825 - -4.8 176,129 + BWI76_RS00850 0.25 -2.7 176,171 + BWI76_RS00850 0.30 -4.0 176,235 - BWI76_RS00850 0.39 -3.6 176,263 + BWI76_RS00850 0.42 -3.6 176,350 + BWI76_RS00850 0.54 -3.5 176,350 + BWI76_RS00850 0.54 -5.2 176,358 - BWI76_RS00850 0.55 -3.8 176,583 - BWI76_RS00850 0.84 -3.9 176,612 - BWI76_RS00850 0.87 -4.7 176,652 + -0.5 176,655 - -4.6 176,669 + -5.5 176,669 + -5.2 176,737 + +0.1 176,861 + -4.6 176,876 + -3.4 176,917 + -2.3 176,966 + BWI76_RS00855 0.13 -5.5 176,994 + BWI76_RS00855 0.15 -2.3 177,129 - BWI76_RS00855 0.25 -4.2 177,132 + BWI76_RS00855 0.25 -2.6 177,164 + BWI76_RS00855 0.28 -2.6 177,231 + BWI76_RS00855 0.32 -2.3 177,375 + BWI76_RS00855 0.43 -2.8 177,458 + BWI76_RS00855 0.49 -1.2 177,466 - BWI76_RS00855 0.49 -3.3 177,598 + BWI76_RS00855 0.59 -4.8 177,712 + BWI76_RS00855 0.67 +1.1 177,719 - BWI76_RS00855 0.68 -2.6 177,744 - BWI76_RS00855 0.70 -5.7 178,145 - -0.1 178,161 - -1.5 178,161 - -0.3 178,175 + +0.3 178,551 - BWI76_RS00865 0.13 +1.5 178,618 - BWI76_RS00865 0.20 -0.5 178,761 - BWI76_RS00865 0.36 +1.3 178,943 + BWI76_RS00865 0.56 +1.9 179,153 + BWI76_RS00865 0.79 +1.9
Or see this region's nucleotide sequence