Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05685

Experiment: Vogels_fungal_media 0.1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05680 and BPHYT_RS05685 are separated by 52 nucleotidesBPHYT_RS05685 and BPHYT_RS05690 are separated by 20 nucleotidesBPHYT_RS05690 and BPHYT_RS05695 are separated by 548 nucleotides BPHYT_RS05680: BPHYT_RS05680 - DNA-cytosine methyltransferase, at 1,297,067 to 1,298,020 _RS05680 BPHYT_RS05685: BPHYT_RS05685 - hypothetical protein, at 1,298,073 to 1,298,306 _RS05685 BPHYT_RS05690: BPHYT_RS05690 - hypothetical protein, at 1,298,327 to 1,298,698 _RS05690 BPHYT_RS05695: BPHYT_RS05695 - transcriptional regulator, at 1,299,247 to 1,300,137 _RS05695 Position (kb) 1298 1299Strain fitness (log2 ratio) -2 -1 0 1at 1298.043 kb on - strandat 1298.043 kb on - strandat 1298.044 kb on + strandat 1298.044 kb on + strandat 1298.044 kb on + strandat 1298.045 kb on - strandat 1298.045 kb on - strandat 1298.045 kb on - strandat 1298.047 kb on - strandat 1298.047 kb on - strandat 1298.047 kb on - strandat 1298.047 kb on - strandat 1298.284 kb on + strandat 1298.284 kb on + strandat 1298.285 kb on - strandat 1298.285 kb on - strandat 1298.294 kb on + strandat 1298.298 kb on + strandat 1298.298 kb on + strandat 1298.299 kb on - strandat 1298.299 kb on - strandat 1298.424 kb on + strand, within BPHYT_RS05690at 1298.743 kb on + strandat 1298.941 kb on - strandat 1299.029 kb on + strandat 1299.177 kb on + strandat 1299.178 kb on - strandat 1299.259 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X
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1,298,043 - -0.1
1,298,043 - +0.1
1,298,044 + +1.6
1,298,044 + +0.8
1,298,044 + -1.2
1,298,045 - +0.5
1,298,045 - +1.1
1,298,045 - -2.3
1,298,047 - -0.7
1,298,047 - -2.2
1,298,047 - +0.3
1,298,047 - +0.7
1,298,284 + +0.6
1,298,284 + +1.6
1,298,285 - +0.3
1,298,285 - +0.1
1,298,294 + +0.1
1,298,298 + +1.1
1,298,298 + -0.0
1,298,299 - +0.4
1,298,299 - -0.7
1,298,424 + BPHYT_RS05690 0.26 -0.1
1,298,743 + -0.3
1,298,941 - -0.5
1,299,029 + +0.7
1,299,177 + +0.3
1,299,178 - +0.1
1,299,259 + +1.6

Or see this region's nucleotide sequence