Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01355

Experiment: Vogels_fungal_media 0.1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01350 and BPHYT_RS01355 are separated by 7 nucleotidesBPHYT_RS01355 and BPHYT_RS01360 are separated by 863 nucleotides BPHYT_RS01350: BPHYT_RS01350 - MFS transporter permease, at 308,361 to 309,623 _RS01350 BPHYT_RS01355: BPHYT_RS01355 - hypothetical protein, at 309,631 to 309,993 _RS01355 BPHYT_RS01360: BPHYT_RS01360 - hypothetical protein, at 310,857 to 311,438 _RS01360 Position (kb) 309 310Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 308.647 kb on - strand, within BPHYT_RS01350at 309.066 kb on + strand, within BPHYT_RS01350at 309.192 kb on + strand, within BPHYT_RS01350at 309.192 kb on + strand, within BPHYT_RS01350at 309.192 kb on + strand, within BPHYT_RS01350at 309.193 kb on - strand, within BPHYT_RS01350at 309.193 kb on - strand, within BPHYT_RS01350at 309.193 kb on - strand, within BPHYT_RS01350at 309.193 kb on - strand, within BPHYT_RS01350at 309.228 kb on + strand, within BPHYT_RS01350at 309.366 kb on - strand, within BPHYT_RS01350at 309.366 kb on - strand, within BPHYT_RS01350at 309.387 kb on + strand, within BPHYT_RS01350at 309.387 kb on + strand, within BPHYT_RS01350at 309.387 kb on + strand, within BPHYT_RS01350at 309.447 kb on - strand, within BPHYT_RS01350at 309.462 kb on + strand, within BPHYT_RS01350at 309.462 kb on + strand, within BPHYT_RS01350at 309.462 kb on + strand, within BPHYT_RS01350at 309.462 kb on + strand, within BPHYT_RS01350at 309.463 kb on - strand, within BPHYT_RS01350at 309.463 kb on - strand, within BPHYT_RS01350at 309.463 kb on - strand, within BPHYT_RS01350at 309.489 kb on - strand, within BPHYT_RS01350at 309.696 kb on + strand, within BPHYT_RS01355at 309.697 kb on - strand, within BPHYT_RS01355at 309.700 kb on + strand, within BPHYT_RS01355at 309.700 kb on + strand, within BPHYT_RS01355at 309.700 kb on + strand, within BPHYT_RS01355at 309.701 kb on - strand, within BPHYT_RS01355at 309.701 kb on - strand, within BPHYT_RS01355at 309.716 kb on + strand, within BPHYT_RS01355at 309.779 kb on - strand, within BPHYT_RS01355at 309.826 kb on + strand, within BPHYT_RS01355at 309.827 kb on - strand, within BPHYT_RS01355at 309.827 kb on - strand, within BPHYT_RS01355at 309.831 kb on - strand, within BPHYT_RS01355at 309.831 kb on - strand, within BPHYT_RS01355at 309.842 kb on - strand, within BPHYT_RS01355at 309.842 kb on - strand, within BPHYT_RS01355at 309.853 kb on + strand, within BPHYT_RS01355at 309.965 kb on + strandat 309.965 kb on + strandat 309.965 kb on + strandat 309.991 kb on + strandat 310.045 kb on + strandat 310.045 kb on + strandat 310.046 kb on - strandat 310.046 kb on - strandat 310.080 kb on + strandat 310.155 kb on + strandat 310.155 kb on + strandat 310.156 kb on - strandat 310.156 kb on - strandat 310.156 kb on - strandat 310.306 kb on + strandat 310.353 kb on + strandat 310.353 kb on + strandat 310.353 kb on + strandat 310.374 kb on - strandat 310.374 kb on - strandat 310.400 kb on - strandat 310.435 kb on - strandat 310.465 kb on - strandat 310.465 kb on - strandat 310.525 kb on + strandat 310.525 kb on + strandat 310.526 kb on - strandat 310.526 kb on - strandat 310.526 kb on - strandat 310.529 kb on + strandat 310.530 kb on - strandat 310.530 kb on - strandat 310.530 kb on - strandat 310.554 kb on - strandat 310.560 kb on + strandat 310.560 kb on + strandat 310.561 kb on - strandat 310.561 kb on - strandat 310.742 kb on + strandat 310.776 kb on + strandat 310.776 kb on + strandat 310.783 kb on - strandat 310.790 kb on + strandat 310.825 kb on + strandat 310.825 kb on + strandat 310.837 kb on + strandat 310.838 kb on - strandat 310.838 kb on - strandat 310.881 kb on - strandat 310.881 kb on - strandat 310.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X
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308,647 - BPHYT_RS01350 0.23 -1.0
309,066 + BPHYT_RS01350 0.56 -0.2
309,192 + BPHYT_RS01350 0.66 +0.2
309,192 + BPHYT_RS01350 0.66 -0.8
309,192 + BPHYT_RS01350 0.66 -0.1
309,193 - BPHYT_RS01350 0.66 -3.2
309,193 - BPHYT_RS01350 0.66 +0.4
309,193 - BPHYT_RS01350 0.66 +1.0
309,193 - BPHYT_RS01350 0.66 +0.5
309,228 + BPHYT_RS01350 0.69 +2.7
309,366 - BPHYT_RS01350 0.80 -2.6
309,366 - BPHYT_RS01350 0.80 -0.7
309,387 + BPHYT_RS01350 0.81 -0.4
309,387 + BPHYT_RS01350 0.81 -0.4
309,387 + BPHYT_RS01350 0.81 -1.1
309,447 - BPHYT_RS01350 0.86 -1.5
309,462 + BPHYT_RS01350 0.87 -0.0
309,462 + BPHYT_RS01350 0.87 +0.4
309,462 + BPHYT_RS01350 0.87 -0.5
309,462 + BPHYT_RS01350 0.87 -0.2
309,463 - BPHYT_RS01350 0.87 +0.4
309,463 - BPHYT_RS01350 0.87 +1.1
309,463 - BPHYT_RS01350 0.87 -2.6
309,489 - BPHYT_RS01350 0.89 -0.5
309,696 + BPHYT_RS01355 0.18 +1.0
309,697 - BPHYT_RS01355 0.18 -2.2
309,700 + BPHYT_RS01355 0.19 +1.1
309,700 + BPHYT_RS01355 0.19 +0.8
309,700 + BPHYT_RS01355 0.19 -0.8
309,701 - BPHYT_RS01355 0.19 -2.0
309,701 - BPHYT_RS01355 0.19 -0.2
309,716 + BPHYT_RS01355 0.23 -1.9
309,779 - BPHYT_RS01355 0.41 -1.2
309,826 + BPHYT_RS01355 0.54 -0.8
309,827 - BPHYT_RS01355 0.54 -0.5
309,827 - BPHYT_RS01355 0.54 -0.1
309,831 - BPHYT_RS01355 0.55 +0.2
309,831 - BPHYT_RS01355 0.55 -0.3
309,842 - BPHYT_RS01355 0.58 -0.3
309,842 - BPHYT_RS01355 0.58 -0.5
309,853 + BPHYT_RS01355 0.61 -0.3
309,965 + -1.1
309,965 + -2.5
309,965 + +0.9
309,991 + +0.6
310,045 + -0.2
310,045 + +0.6
310,046 - -0.3
310,046 - -1.8
310,080 + +0.5
310,155 + -3.6
310,155 + -1.1
310,156 - -0.7
310,156 - +0.4
310,156 - +0.7
310,306 + -0.4
310,353 + +1.1
310,353 + +0.3
310,353 + -2.7
310,374 - +0.3
310,374 - +0.3
310,400 - -0.8
310,435 - +0.2
310,465 - -0.2
310,465 - -3.1
310,525 + -0.2
310,525 + -1.5
310,526 - -0.4
310,526 - -0.3
310,526 - -1.1
310,529 + -1.2
310,530 - -0.3
310,530 - -0.2
310,530 - -0.8
310,554 - +0.0
310,560 + +0.7
310,560 + +0.1
310,561 - -0.9
310,561 - -1.1
310,742 + -1.3
310,776 + +1.1
310,776 + +0.1
310,783 - +0.3
310,790 + -1.0
310,825 + +1.0
310,825 + -0.1
310,837 + +0.3
310,838 - +0.3
310,838 - +0.3
310,881 - -0.3
310,881 - -2.1
310,881 - -0.6

Or see this region's nucleotide sequence