Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005605

Experiment: Lumichrome 5 mM in soil extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lumichrome 5 mM in soil extract
1,893,893	+				+1.0
1,893,894	-				-0.2
1,893,915	+				+0.3
1,893,916	-				+0.7
1,893,978	+				-0.4
1,893,992	-				-0.8
1,894,033	+				-0.9
1,894,033	+				+1.1
1,894,034	-				-1.1
1,894,209	+		ABIE53_005604	0.25	+1.6
1,894,240	+		ABIE53_005604	0.29	-1.4
1,894,240	+		ABIE53_005604	0.29	+1.0
1,894,240	+		ABIE53_005604	0.29	-0.5
1,894,240	+		ABIE53_005604	0.29	+0.3
1,894,241	-		ABIE53_005604	0.29	+0.0
1,894,241	-		ABIE53_005604	0.29	-0.4
1,894,241	-		ABIE53_005604	0.29	-1.0
1,894,241	-		ABIE53_005604	0.29	-0.7
1,894,363	-		ABIE53_005604	0.44	-0.6
1,894,388	+		ABIE53_005604	0.48	-0.1
1,894,388	+		ABIE53_005604	0.48	-0.2
1,894,388	+		ABIE53_005604	0.48	-0.4
1,894,388	+		ABIE53_005604	0.48	-2.2
1,894,388	+		ABIE53_005604	0.48	+1.8
1,894,389	-		ABIE53_005604	0.48	-0.9
1,894,389	-		ABIE53_005604	0.48	+1.1
1,894,389	-		ABIE53_005604	0.48	-0.1
1,894,390	+		ABIE53_005604	0.48	+0.1
1,894,390	+		ABIE53_005604	0.48	+0.0
1,894,390	+		ABIE53_005604	0.48	-1.2
1,894,391	-		ABIE53_005604	0.48	-0.2
1,894,391	-		ABIE53_005604	0.48	-0.7
1,894,403	+		ABIE53_005604	0.50	-0.4
1,894,403	+		ABIE53_005604	0.50	+1.0
1,894,404	-		ABIE53_005604	0.50	+0.1
1,894,553	+		ABIE53_005604	0.69	+1.1
1,894,553	+		ABIE53_005604	0.69	-0.9
1,894,553	+		ABIE53_005604	0.69	+0.8
1,894,554	-		ABIE53_005604	0.69	+0.6
1,894,554	-		ABIE53_005604	0.69	+0.5
1,894,558	+		ABIE53_005604	0.69	+0.3
1,894,559	-		ABIE53_005604	0.70	-0.1
1,894,634	-		ABIE53_005604	0.79	+0.1
1,894,672	+		ABIE53_005604	0.84	+1.3
1,894,672	+		ABIE53_005604	0.84	+0.4
1,894,687	+		ABIE53_005604	0.86	+0.6
1,894,687	+		ABIE53_005604	0.86	+0.5
1,894,789	+				-1.2
1,894,790	-				+0.6
1,894,790	-				-0.2
1,894,887	+				-0.4
1,894,887	+				+0.4
1,894,888	-				+0.6
1,894,888	-				+0.0
1,894,888	-				-0.1
1,894,900	+				+0.2
1,894,997	+		ABIE53_005605	0.12	-0.3
1,894,997	+		ABIE53_005605	0.12	-0.5
1,894,997	+		ABIE53_005605	0.12	-1.1
1,894,997	+		ABIE53_005605	0.12	+0.1
1,894,997	+		ABIE53_005605	0.12	+1.3
1,894,997	+		ABIE53_005605	0.12	-0.3
1,894,997	+		ABIE53_005605	0.12	-0.9
1,894,998	-		ABIE53_005605	0.12	-0.1
1,894,998	-		ABIE53_005605	0.12	-3.1
1,894,999	+		ABIE53_005605	0.13	-1.3
1,894,999	+		ABIE53_005605	0.13	+2.1
1,894,999	+		ABIE53_005605	0.13	+0.2
1,895,000	-		ABIE53_005605	0.13	+0.1
1,895,000	-		ABIE53_005605	0.13	-0.1
1,895,026	-		ABIE53_005605	0.16	-0.4
1,895,026	-		ABIE53_005605	0.16	+0.7
1,895,026	-		ABIE53_005605	0.16	-1.6
1,895,218	+		ABIE53_005605	0.38	-0.3
1,895,218	+		ABIE53_005605	0.38	+0.4
1,895,219	-		ABIE53_005605	0.38	+0.1
1,895,219	-		ABIE53_005605	0.38	+0.2
1,895,237	-		ABIE53_005605	0.40	-1.8
1,895,340	+		ABIE53_005605	0.52	-0.8
1,895,340	+		ABIE53_005605	0.52	-0.3
1,895,341	-		ABIE53_005605	0.52	-0.9
1,895,341	-		ABIE53_005605	0.52	+2.5
1,895,349	+		ABIE53_005605	0.53	+0.0
1,895,350	-		ABIE53_005605	0.53	+3.4
1,895,350	-		ABIE53_005605	0.53	+3.1
1,895,350	-		ABIE53_005605	0.53	-1.1
1,895,350	-		ABIE53_005605	0.53	+0.3
1,895,353	-		ABIE53_005605	0.54	-0.7
1,895,353	-		ABIE53_005605	0.54	+0.7
1,895,353	-		ABIE53_005605	0.54	-0.5
1,895,372	+		ABIE53_005605	0.56	-2.2
1,895,372	+		ABIE53_005605	0.56	-0.2
1,895,372	+		ABIE53_005605	0.56	-1.0
1,895,372	+		ABIE53_005605	0.56	-1.0
1,895,373	-		ABIE53_005605	0.56	-0.1
1,895,373	-		ABIE53_005605	0.56	+2.1
1,895,448	-		ABIE53_005605	0.65	-0.4
1,895,449	+		ABIE53_005605	0.65	-1.2
1,895,449	+		ABIE53_005605	0.65	-0.9
1,895,449	+		ABIE53_005605	0.65	-0.0
1,895,450	-		ABIE53_005605	0.65	-0.2
1,895,450	-		ABIE53_005605	0.65	+0.1
1,895,450	-		ABIE53_005605	0.65	-0.4
1,895,450	-		ABIE53_005605	0.65	+0.6
1,895,524	-		ABIE53_005605	0.74	+2.1
1,895,524	-		ABIE53_005605	0.74	-0.9
1,895,524	-		ABIE53_005605	0.74	+0.6
1,895,524	-		ABIE53_005605	0.74	-1.4
1,895,577	+		ABIE53_005605	0.80	-0.6
1,895,578	-		ABIE53_005605	0.80	-0.3
1,895,647	+		ABIE53_005605	0.88	+0.3
1,895,647	+		ABIE53_005605	0.88	+0.1
1,895,647	+		ABIE53_005605	0.88	+0.2
1,895,647	+		ABIE53_005605	0.88	+0.4
1,895,648	-		ABIE53_005605	0.88	+1.3
1,895,696	+				-0.5
1,895,696	+				+0.0
1,895,697	-				-1.0
1,895,711	+				+0.2
1,895,711	+				-0.0
1,895,711	+				-0.2
1,895,711	+				+2.1
1,895,711	+				-0.4
1,895,711	+				-0.9
1,895,711	+				+0.8
1,895,711	+				-1.2
1,895,711	+				+1.4
1,895,712	-				+0.1
1,895,712	-				-1.5
1,895,712	-				-1.0
1,895,712	-				-0.9
1,895,712	-				-0.2
1,895,712	-				+0.3
1,895,826	+				-0.3
1,895,826	+				+0.1
1,895,826	+				-2.6
1,895,827	-				+0.6
1,895,827	-				-0.4
1,895,827	-				+0.2
1,895,827	-				-0.1
1,895,827	-				-0.7
1,895,894	+				-0.2
1,895,894	+				+0.3
1,895,894	+				-0.3
1,895,894	+				-1.6
1,895,894	+				-0.9
1,895,894	+				-0.2
1,895,895	-				-0.9
1,895,895	-				-0.9
1,895,895	-				-0.0
1,895,895	-				-0.7
1,895,895	-				-0.1
1,895,895	-				+2.7
1,895,977	+				+0.2
1,895,978	-				+0.1
1,895,978	-				-2.4
1,895,978	-				+1.1
1,895,978	-				+0.6
1,895,978	-				-0.4
1,895,978	-				+1.6
1,896,030	+				+0.8
1,896,030	+				-1.8
1,896,031	-				+2.1
1,896,031	-				-1.1
1,896,031	-				+0.3
1,896,044	+				-0.8
1,896,044	+				+0.3
1,896,044	+				-0.3
1,896,045	-				+0.3
1,896,045	-				-0.2
1,896,045	-				-0.2
1,896,045	-				-0.6
1,896,078	+				-0.7
1,896,078	+				-0.7
1,896,079	-				-0.3
1,896,079	-				-0.2
1,896,080	+				-0.9
1,896,080	+				+0.2
1,896,080	+				+1.1
1,896,080	+				-1.7
1,896,080	+				+1.8
1,896,080	+				+1.9
1,896,081	-				+0.5
1,896,081	-				-0.2
1,896,081	-				+1.8
1,896,081	-				+0.3
1,896,328	+				+1.7
1,896,339	+				+0.4
1,896,339	+				-0.4
1,896,339	+				-0.7
1,896,382	+				-0.3
1,896,382	+				+0.9
1,896,382	+				-0.1
1,896,383	-				+0.4
1,896,421	+				+0.1
1,896,421	+				-0.2
1,896,421	+				-0.3
1,896,421	+				-1.3
1,896,422	-				+0.1
1,896,428	+				+0.2
1,896,428	+				+4.1
1,896,429	-				-0.9
1,896,429	-				-0.4
1,896,429	-				-0.5
1,896,446	+				+0.1
1,896,446	+				-0.3
1,896,463	-				+0.8
1,896,463	-				+1.3
1,896,485	+				-0.0
1,896,485	+				+0.8
1,896,485	+				-0.0
1,896,486	-				+0.1
1,896,486	-				+1.1
1,896,486	-				-0.2
1,896,486	-				+3.1
1,896,517	+				+1.1
1,896,517	+				-1.0
1,896,518	-				-0.8
1,896,518	-				-0.0
1,896,700	-		ABIE53_005606	0.33	-0.3