Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36560 and BPHYT_RS36565 overlap by 4 nucleotides BPHYT_RS36565 and BPHYT_RS36570 are separated by 203 nucleotides BPHYT_RS36570 and BPHYT_RS36575 are separated by 271 nucleotides BPHYT_RS36575 and BPHYT_RS36580 are separated by 46 nucleotides
BPHYT_RS36560: BPHYT_RS36560 - hypothetical protein, at 115,707 to 115,979
_RS36560
BPHYT_RS36565: BPHYT_RS36565 - hypothetical protein, at 115,976 to 116,476
_RS36565
BPHYT_RS36570: BPHYT_RS36570 - histone, at 116,680 to 116,970
_RS36570
BPHYT_RS36575: BPHYT_RS36575 - hypothetical protein, at 117,242 to 117,781
_RS36575
BPHYT_RS36580: BPHYT_RS36580 - hypothetical protein, at 117,828 to 118,277
_RS36580
Position (kb) 116
117 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 115.689 kb on + strand at 115.689 kb on + strand at 115.690 kb on - strand at 115.690 kb on - strand at 115.693 kb on + strand at 115.694 kb on - strand at 115.694 kb on - strand at 115.740 kb on + strand, within BPHYT_RS36560 at 115.796 kb on + strand, within BPHYT_RS36560 at 115.824 kb on - strand, within BPHYT_RS36560 at 116.025 kb on + strand at 116.026 kb on - strand, within BPHYT_RS36565 at 116.186 kb on + strand, within BPHYT_RS36565 at 116.186 kb on + strand, within BPHYT_RS36565 at 116.186 kb on + strand, within BPHYT_RS36565 at 116.187 kb on - strand, within BPHYT_RS36565 at 116.187 kb on - strand, within BPHYT_RS36565 at 116.252 kb on + strand, within BPHYT_RS36565 at 116.252 kb on + strand, within BPHYT_RS36565 at 116.252 kb on + strand, within BPHYT_RS36565 at 116.253 kb on - strand, within BPHYT_RS36565 at 116.253 kb on - strand, within BPHYT_RS36565 at 116.253 kb on - strand, within BPHYT_RS36565 at 116.253 kb on - strand, within BPHYT_RS36565 at 116.276 kb on + strand, within BPHYT_RS36565 at 116.276 kb on + strand, within BPHYT_RS36565 at 116.276 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.294 kb on + strand, within BPHYT_RS36565 at 116.295 kb on - strand, within BPHYT_RS36565 at 116.389 kb on + strand, within BPHYT_RS36565 at 116.462 kb on - strand at 116.462 kb on - strand at 116.701 kb on + strand at 116.810 kb on - strand, within BPHYT_RS36570 at 117.779 kb on + strand at 117.786 kb on - strand at 117.892 kb on + strand, within BPHYT_RS36580 at 117.898 kb on - strand, within BPHYT_RS36580 at 117.898 kb on - strand, within BPHYT_RS36580 at 117.949 kb on + strand, within BPHYT_RS36580 at 117.950 kb on - strand, within BPHYT_RS36580
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB remove 115,689 + +0.1 115,689 + -0.7 115,690 - -1.6 115,690 - +1.1 115,693 + +0.6 115,694 - -0.7 115,694 - +1.0 115,740 + BPHYT_RS36560 0.12 -0.3 115,796 + BPHYT_RS36560 0.33 -0.1 115,824 - BPHYT_RS36560 0.43 -0.2 116,025 + -0.2 116,026 - BPHYT_RS36565 0.10 +0.3 116,186 + BPHYT_RS36565 0.42 +0.9 116,186 + BPHYT_RS36565 0.42 -0.6 116,186 + BPHYT_RS36565 0.42 +0.6 116,187 - BPHYT_RS36565 0.42 +0.1 116,187 - BPHYT_RS36565 0.42 -1.1 116,252 + BPHYT_RS36565 0.55 +1.4 116,252 + BPHYT_RS36565 0.55 -0.1 116,252 + BPHYT_RS36565 0.55 +0.3 116,253 - BPHYT_RS36565 0.55 +0.7 116,253 - BPHYT_RS36565 0.55 -0.3 116,253 - BPHYT_RS36565 0.55 -0.4 116,253 - BPHYT_RS36565 0.55 -0.1 116,276 + BPHYT_RS36565 0.60 -1.3 116,276 + BPHYT_RS36565 0.60 +0.0 116,276 + BPHYT_RS36565 0.60 +0.6 116,294 + BPHYT_RS36565 0.63 +0.2 116,294 + BPHYT_RS36565 0.63 +0.5 116,294 + BPHYT_RS36565 0.63 -0.0 116,294 + BPHYT_RS36565 0.63 +0.4 116,294 + BPHYT_RS36565 0.63 -3.1 116,295 - BPHYT_RS36565 0.64 -1.4 116,389 + BPHYT_RS36565 0.82 -0.3 116,462 - +0.8 116,462 - -0.3 116,701 + +2.9 116,810 - BPHYT_RS36570 0.45 -1.2 117,779 + +2.1 117,786 - -0.2 117,892 + BPHYT_RS36580 0.14 -0.5 117,898 - BPHYT_RS36580 0.16 +0.5 117,898 - BPHYT_RS36580 0.16 -0.5 117,949 + BPHYT_RS36580 0.27 -0.4 117,950 - BPHYT_RS36580 0.27 -0.7
Or see this region's nucleotide sequence