Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13885

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13880 and BPHYT_RS13885 overlap by 1 nucleotidesBPHYT_RS13885 and BPHYT_RS13890 overlap by 8 nucleotides BPHYT_RS13880: BPHYT_RS13880 - oxidoreductase, at 3,168,671 to 3,169,720 _RS13880 BPHYT_RS13885: BPHYT_RS13885 - myo-inositol 2-dehydrogenase, at 3,169,720 to 3,170,736 _RS13885 BPHYT_RS13890: BPHYT_RS13890 - RpiR family transcriptional regulator, at 3,170,729 to 3,171,610 _RS13890 Position (kb) 3169 3170 3171Strain fitness (log2 ratio) -2 -1 0 1 2at 3169.818 kb on + strandat 3169.818 kb on + strandat 3169.874 kb on + strand, within BPHYT_RS13885at 3169.875 kb on - strand, within BPHYT_RS13885at 3171.112 kb on - strand, within BPHYT_RS13890at 3171.150 kb on + strand, within BPHYT_RS13890at 3171.354 kb on + strand, within BPHYT_RS13890at 3171.504 kb on + strand, within BPHYT_RS13890at 3171.544 kb on - strandat 3171.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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3,169,818 + +1.1
3,169,818 + +0.2
3,169,874 + BPHYT_RS13885 0.15 +1.7
3,169,875 - BPHYT_RS13885 0.15 +0.9
3,171,112 - BPHYT_RS13890 0.43 +1.9
3,171,150 + BPHYT_RS13890 0.48 -2.6
3,171,354 + BPHYT_RS13890 0.71 +0.9
3,171,504 + BPHYT_RS13890 0.88 +0.1
3,171,544 - -0.4
3,171,631 - +0.4

Or see this region's nucleotide sequence