Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07035

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07030 and BPHYT_RS07035 are separated by 125 nucleotidesBPHYT_RS07035 and BPHYT_RS07040 are separated by 91 nucleotides BPHYT_RS07030: BPHYT_RS07030 - DMT transporter permease, at 1,589,578 to 1,590,489 _RS07030 BPHYT_RS07035: BPHYT_RS07035 - transcriptional regulator, at 1,590,615 to 1,591,544 _RS07035 BPHYT_RS07040: BPHYT_RS07040 - asparaginase, at 1,591,636 to 1,592,727 _RS07040 Position (kb) 1590 1591 1592Strain fitness (log2 ratio) -1 0 1 2at 1590.505 kb on + strandat 1590.508 kb on + strandat 1591.203 kb on + strand, within BPHYT_RS07035at 1591.284 kb on + strand, within BPHYT_RS07035at 1591.285 kb on - strand, within BPHYT_RS07035at 1591.285 kb on - strand, within BPHYT_RS07035at 1591.432 kb on - strand, within BPHYT_RS07035at 1591.582 kb on - strandat 1591.582 kb on - strandat 1591.621 kb on - strandat 1591.706 kb on + strandat 1591.706 kb on + strandat 1591.707 kb on - strandat 1591.997 kb on - strand, within BPHYT_RS07040at 1592.342 kb on - strand, within BPHYT_RS07040at 1592.360 kb on - strand, within BPHYT_RS07040

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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1,590,505 + +0.7
1,590,508 + +0.5
1,591,203 + BPHYT_RS07035 0.63 +1.1
1,591,284 + BPHYT_RS07035 0.72 -0.5
1,591,285 - BPHYT_RS07035 0.72 +0.7
1,591,285 - BPHYT_RS07035 0.72 +1.9
1,591,432 - BPHYT_RS07035 0.88 +1.9
1,591,582 - +0.2
1,591,582 - +0.2
1,591,621 - +0.5
1,591,706 + +1.0
1,591,706 + -1.1
1,591,707 - +0.6
1,591,997 - BPHYT_RS07040 0.33 -0.0
1,592,342 - BPHYT_RS07040 0.65 +0.2
1,592,360 - BPHYT_RS07040 0.66 +0.4

Or see this region's nucleotide sequence