Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02880

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02875 and BPHYT_RS02880 are separated by 29 nucleotidesBPHYT_RS02880 and BPHYT_RS02885 are separated by 39 nucleotides BPHYT_RS02875: BPHYT_RS02875 - adenine glycosylase, at 641,219 to 642,280 _RS02875 BPHYT_RS02880: BPHYT_RS02880 - ATP-dependent protease, at 642,310 to 642,945 _RS02880 BPHYT_RS02885: BPHYT_RS02885 - glmZ(sRNA)-inactivating NTPase, at 642,985 to 643,878 _RS02885 Position (kb) 642 643Strain fitness (log2 ratio) -3 -2 -1 0 1at 641.367 kb on - strand, within BPHYT_RS02875at 641.456 kb on + strand, within BPHYT_RS02875at 641.457 kb on - strand, within BPHYT_RS02875at 641.457 kb on - strand, within BPHYT_RS02875at 641.460 kb on - strand, within BPHYT_RS02875at 641.460 kb on - strand, within BPHYT_RS02875at 642.335 kb on + strandat 642.336 kb on - strandat 642.766 kb on + strand, within BPHYT_RS02880at 642.767 kb on - strand, within BPHYT_RS02880at 642.894 kb on + strandat 642.894 kb on + strandat 642.895 kb on - strandat 642.930 kb on + strandat 642.930 kb on + strandat 642.937 kb on - strandat 642.937 kb on - strandat 642.994 kb on + strandat 642.994 kb on + strandat 642.995 kb on - strandat 643.135 kb on + strand, within BPHYT_RS02885at 643.136 kb on - strand, within BPHYT_RS02885at 643.139 kb on + strand, within BPHYT_RS02885at 643.139 kb on + strand, within BPHYT_RS02885at 643.140 kb on - strand, within BPHYT_RS02885at 643.140 kb on - strand, within BPHYT_RS02885at 643.140 kb on - strand, within BPHYT_RS02885at 643.140 kb on - strand, within BPHYT_RS02885at 643.286 kb on + strand, within BPHYT_RS02885at 643.286 kb on + strand, within BPHYT_RS02885at 643.287 kb on - strand, within BPHYT_RS02885at 643.444 kb on - strand, within BPHYT_RS02885at 643.639 kb on + strand, within BPHYT_RS02885at 643.640 kb on - strand, within BPHYT_RS02885at 643.640 kb on - strand, within BPHYT_RS02885at 643.640 kb on - strand, within BPHYT_RS02885at 643.799 kb on + strandat 643.799 kb on + strandat 643.800 kb on - strandat 643.802 kb on + strandat 643.802 kb on + strandat 643.853 kb on - strandat 643.854 kb on + strandat 643.854 kb on + strandat 643.855 kb on - strandat 643.870 kb on + strandat 643.870 kb on + strandat 643.907 kb on + strandat 643.907 kb on + strandat 643.907 kb on + strandat 643.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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641,367 - BPHYT_RS02875 0.14 -1.8
641,456 + BPHYT_RS02875 0.22 -0.5
641,457 - BPHYT_RS02875 0.22 +1.0
641,457 - BPHYT_RS02875 0.22 -0.2
641,460 - BPHYT_RS02875 0.23 -0.3
641,460 - BPHYT_RS02875 0.23 -0.6
642,335 + -0.5
642,336 - +0.4
642,766 + BPHYT_RS02880 0.72 -1.1
642,767 - BPHYT_RS02880 0.72 -1.1
642,894 + -0.6
642,894 + +0.2
642,895 - -3.3
642,930 + +1.2
642,930 + -0.8
642,937 - +0.2
642,937 - -0.3
642,994 + +1.1
642,994 + -1.1
642,995 - +0.3
643,135 + BPHYT_RS02885 0.17 -0.2
643,136 - BPHYT_RS02885 0.17 +0.6
643,139 + BPHYT_RS02885 0.17 +0.0
643,139 + BPHYT_RS02885 0.17 +0.9
643,140 - BPHYT_RS02885 0.17 -0.9
643,140 - BPHYT_RS02885 0.17 +0.2
643,140 - BPHYT_RS02885 0.17 +0.5
643,140 - BPHYT_RS02885 0.17 +1.1
643,286 + BPHYT_RS02885 0.34 -0.5
643,286 + BPHYT_RS02885 0.34 -0.1
643,287 - BPHYT_RS02885 0.34 +0.2
643,444 - BPHYT_RS02885 0.51 +1.4
643,639 + BPHYT_RS02885 0.73 +0.4
643,640 - BPHYT_RS02885 0.73 +0.1
643,640 - BPHYT_RS02885 0.73 -1.7
643,640 - BPHYT_RS02885 0.73 -0.0
643,799 + +0.3
643,799 + +0.3
643,800 - +1.3
643,802 + -0.4
643,802 + -0.0
643,853 - +1.3
643,854 + +1.4
643,854 + -0.9
643,855 - +0.9
643,870 + -1.6
643,870 + +0.9
643,907 + +0.2
643,907 + -0.4
643,907 + -1.4
643,908 - -0.9

Or see this region's nucleotide sequence