Experiment: p-Coumaric (C) and Ammonium chloride (N); with TAPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23285 and PFLU_RS23290 are separated by 11 nucleotides PFLU_RS23290 and PFLU_RS23295 are separated by 38 nucleotides PFLU_RS23295 and PFLU_RS23300 are separated by 163 nucleotides
PFLU_RS23285: PFLU_RS23285 - succinylglutamate desuccinylase, at 5,227,178 to 5,228,182
_RS23285
PFLU_RS23290: PFLU_RS23290 - hypothetical protein, at 5,228,194 to 5,228,484
_RS23290
PFLU_RS23295: PFLU_RS23295 - N-succinylarginine dihydrolase, at 5,228,523 to 5,229,869
_RS23295
PFLU_RS23300: PFLU_RS23300 - succinylglutamate-semialdehyde dehydrogenase, at 5,230,033 to 5,231,499
_RS23300
Position (kb) 5228
5229
5230 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5227.572 kb on + strand, within PFLU_RS23285 at 5227.572 kb on + strand, within PFLU_RS23285 at 5227.572 kb on + strand, within PFLU_RS23285 at 5227.572 kb on + strand, within PFLU_RS23285 at 5227.572 kb on + strand, within PFLU_RS23285 at 5227.572 kb on + strand, within PFLU_RS23285 at 5227.572 kb on + strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.573 kb on - strand, within PFLU_RS23285 at 5227.576 kb on + strand, within PFLU_RS23285 at 5227.576 kb on + strand, within PFLU_RS23285 at 5227.576 kb on + strand, within PFLU_RS23285 at 5227.576 kb on + strand, within PFLU_RS23285 at 5227.577 kb on - strand, within PFLU_RS23285 at 5227.577 kb on - strand, within PFLU_RS23285 at 5227.577 kb on - strand, within PFLU_RS23285 at 5227.689 kb on + strand, within PFLU_RS23285 at 5227.689 kb on + strand, within PFLU_RS23285 at 5227.690 kb on - strand, within PFLU_RS23285 at 5227.690 kb on - strand, within PFLU_RS23285 at 5227.690 kb on - strand, within PFLU_RS23285 at 5227.690 kb on - strand, within PFLU_RS23285 at 5227.740 kb on + strand, within PFLU_RS23285 at 5227.740 kb on + strand, within PFLU_RS23285 at 5227.741 kb on - strand, within PFLU_RS23285 at 5227.741 kb on - strand, within PFLU_RS23285 at 5228.182 kb on + strand at 5228.182 kb on + strand at 5228.182 kb on + strand at 5228.182 kb on + strand at 5228.182 kb on + strand at 5228.182 kb on + strand at 5228.183 kb on - strand at 5228.183 kb on - strand at 5228.183 kb on - strand at 5228.183 kb on - strand at 5228.183 kb on - strand at 5228.195 kb on + strand at 5228.196 kb on - strand at 5228.315 kb on + strand, within PFLU_RS23290 at 5228.316 kb on - strand, within PFLU_RS23290 at 5228.484 kb on + strand at 5228.484 kb on + strand at 5228.484 kb on + strand at 5228.484 kb on + strand at 5228.484 kb on + strand at 5228.484 kb on + strand at 5228.484 kb on + strand at 5228.485 kb on - strand at 5228.485 kb on - strand at 5228.485 kb on - strand at 5228.485 kb on - strand at 5228.485 kb on - strand at 5228.485 kb on - strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.489 kb on + strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.490 kb on - strand at 5228.501 kb on + strand at 5228.502 kb on - strand at 5228.502 kb on - strand at 5228.502 kb on - strand at 5228.508 kb on + strand at 5228.508 kb on + strand at 5228.508 kb on + strand at 5228.508 kb on + strand at 5228.508 kb on + strand at 5228.524 kb on + strand at 5228.524 kb on + strand at 5228.524 kb on + strand at 5228.524 kb on + strand at 5228.648 kb on - strand at 5228.680 kb on + strand, within PFLU_RS23295 at 5228.680 kb on + strand, within PFLU_RS23295 at 5228.680 kb on + strand, within PFLU_RS23295 at 5228.681 kb on - strand, within PFLU_RS23295 at 5228.699 kb on + strand, within PFLU_RS23295 at 5228.851 kb on + strand, within PFLU_RS23295 at 5228.851 kb on + strand, within PFLU_RS23295 at 5228.944 kb on + strand, within PFLU_RS23295 at 5228.944 kb on + strand, within PFLU_RS23295 at 5228.944 kb on + strand, within PFLU_RS23295 at 5228.944 kb on + strand, within PFLU_RS23295 at 5228.944 kb on + strand, within PFLU_RS23295 at 5228.945 kb on - strand, within PFLU_RS23295 at 5228.945 kb on - strand, within PFLU_RS23295 at 5229.079 kb on + strand, within PFLU_RS23295 at 5229.079 kb on + strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.080 kb on - strand, within PFLU_RS23295 at 5229.163 kb on + strand, within PFLU_RS23295 at 5229.163 kb on + strand, within PFLU_RS23295 at 5229.163 kb on + strand, within PFLU_RS23295 at 5229.164 kb on - strand, within PFLU_RS23295 at 5229.164 kb on - strand, within PFLU_RS23295 at 5229.164 kb on - strand, within PFLU_RS23295 at 5229.164 kb on - strand, within PFLU_RS23295 at 5229.239 kb on - strand, within PFLU_RS23295 at 5229.283 kb on + strand, within PFLU_RS23295 at 5229.284 kb on - strand, within PFLU_RS23295 at 5229.284 kb on - strand, within PFLU_RS23295 at 5229.314 kb on - strand, within PFLU_RS23295 at 5229.463 kb on + strand, within PFLU_RS23295 at 5229.463 kb on + strand, within PFLU_RS23295 at 5229.464 kb on - strand, within PFLU_RS23295 at 5229.464 kb on - strand, within PFLU_RS23295 at 5229.817 kb on + strand at 5229.817 kb on + strand at 5229.817 kb on + strand at 5229.817 kb on + strand at 5229.817 kb on + strand at 5229.817 kb on + strand at 5229.818 kb on - strand at 5229.821 kb on + strand at 5229.821 kb on + strand at 5229.821 kb on + strand at 5229.821 kb on + strand at 5229.822 kb on - strand at 5229.822 kb on - strand at 5229.822 kb on - strand at 5229.837 kb on + strand at 5229.837 kb on + strand at 5229.837 kb on + strand at 5229.838 kb on - strand at 5229.838 kb on - strand at 5229.838 kb on - strand at 5229.859 kb on + strand at 5229.859 kb on + strand at 5229.859 kb on + strand at 5229.859 kb on + strand at 5229.860 kb on - strand at 5229.860 kb on - strand at 5229.860 kb on - strand at 5229.893 kb on + strand at 5229.894 kb on - strand at 5229.894 kb on - strand at 5229.894 kb on - strand at 5229.894 kb on - strand at 5229.894 kb on - strand at 5229.894 kb on - strand at 5229.902 kb on - strand at 5229.902 kb on - strand at 5229.902 kb on - strand at 5229.902 kb on - strand at 5229.902 kb on - strand at 5229.902 kb on - strand at 5229.912 kb on - strand at 5230.034 kb on + strand at 5230.034 kb on + strand at 5230.035 kb on - strand at 5230.035 kb on - strand at 5230.115 kb on + strand at 5230.116 kb on - strand at 5230.116 kb on - strand at 5230.116 kb on - strand at 5230.127 kb on + strand at 5230.128 kb on - strand at 5230.128 kb on - strand at 5230.128 kb on - strand at 5230.130 kb on + strand at 5230.130 kb on + strand at 5230.130 kb on + strand at 5230.130 kb on + strand at 5230.130 kb on + strand at 5230.131 kb on - strand at 5230.131 kb on - strand at 5230.131 kb on - strand at 5230.131 kb on - strand at 5230.131 kb on - strand at 5230.131 kb on - strand at 5230.163 kb on - strand at 5230.163 kb on - strand at 5230.254 kb on - strand, within PFLU_RS23300 at 5230.686 kb on + strand, within PFLU_RS23300 at 5230.687 kb on - strand, within PFLU_RS23300 at 5230.687 kb on - strand, within PFLU_RS23300 at 5230.701 kb on + strand, within PFLU_RS23300 at 5230.701 kb on + strand, within PFLU_RS23300 at 5230.709 kb on + strand, within PFLU_RS23300 at 5230.709 kb on + strand, within PFLU_RS23300 at 5230.709 kb on + strand, within PFLU_RS23300 at 5230.709 kb on + strand, within PFLU_RS23300 at 5230.710 kb on - strand, within PFLU_RS23300 at 5230.710 kb on - strand, within PFLU_RS23300 at 5230.710 kb on - strand, within PFLU_RS23300
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) and Ammonium chloride (N); with TAPS remove 5,227,572 + PFLU_RS23285 0.39 -0.1 5,227,572 + PFLU_RS23285 0.39 +0.8 5,227,572 + PFLU_RS23285 0.39 +1.8 5,227,572 + PFLU_RS23285 0.39 +0.5 5,227,572 + PFLU_RS23285 0.39 +0.5 5,227,572 + PFLU_RS23285 0.39 +1.6 5,227,572 + PFLU_RS23285 0.39 +1.0 5,227,573 - PFLU_RS23285 0.39 -0.6 5,227,573 - PFLU_RS23285 0.39 -0.9 5,227,573 - PFLU_RS23285 0.39 -0.1 5,227,573 - PFLU_RS23285 0.39 -0.5 5,227,573 - PFLU_RS23285 0.39 -0.9 5,227,573 - PFLU_RS23285 0.39 -0.8 5,227,573 - PFLU_RS23285 0.39 +1.5 5,227,573 - PFLU_RS23285 0.39 -0.3 5,227,573 - PFLU_RS23285 0.39 -0.8 5,227,573 - PFLU_RS23285 0.39 -0.0 5,227,573 - PFLU_RS23285 0.39 -1.4 5,227,573 - PFLU_RS23285 0.39 +0.5 5,227,573 - PFLU_RS23285 0.39 +0.8 5,227,573 - PFLU_RS23285 0.39 +0.8 5,227,573 - PFLU_RS23285 0.39 -0.0 5,227,573 - PFLU_RS23285 0.39 +0.7 5,227,573 - PFLU_RS23285 0.39 +0.3 5,227,573 - PFLU_RS23285 0.39 +1.2 5,227,573 - PFLU_RS23285 0.39 +1.3 5,227,573 - PFLU_RS23285 0.39 -1.4 5,227,576 + PFLU_RS23285 0.40 +0.5 5,227,576 + PFLU_RS23285 0.40 -0.2 5,227,576 + PFLU_RS23285 0.40 +0.7 5,227,576 + PFLU_RS23285 0.40 -0.3 5,227,577 - PFLU_RS23285 0.40 +1.3 5,227,577 - PFLU_RS23285 0.40 +1.0 5,227,577 - PFLU_RS23285 0.40 +0.1 5,227,689 + PFLU_RS23285 0.51 +0.7 5,227,689 + PFLU_RS23285 0.51 +0.7 5,227,690 - PFLU_RS23285 0.51 -0.8 5,227,690 - PFLU_RS23285 0.51 -0.4 5,227,690 - PFLU_RS23285 0.51 +0.2 5,227,690 - PFLU_RS23285 0.51 +0.5 5,227,740 + PFLU_RS23285 0.56 -1.4 5,227,740 + PFLU_RS23285 0.56 +1.8 5,227,741 - PFLU_RS23285 0.56 +0.3 5,227,741 - PFLU_RS23285 0.56 +0.5 5,228,182 + -0.6 5,228,182 + -0.7 5,228,182 + +0.6 5,228,182 + -1.7 5,228,182 + -1.5 5,228,182 + +1.8 5,228,183 - +0.5 5,228,183 - -0.9 5,228,183 - +0.0 5,228,183 - -0.1 5,228,183 - +1.2 5,228,195 + -1.4 5,228,196 - +0.6 5,228,315 + PFLU_RS23290 0.42 -0.5 5,228,316 - PFLU_RS23290 0.42 +0.8 5,228,484 + -1.0 5,228,484 + -0.2 5,228,484 + -1.2 5,228,484 + -2.2 5,228,484 + +1.8 5,228,484 + -1.0 5,228,484 + -0.0 5,228,485 - +0.1 5,228,485 - +0.6 5,228,485 - +0.9 5,228,485 - -2.1 5,228,485 - +0.1 5,228,485 - +0.1 5,228,489 + -1.7 5,228,489 + +0.1 5,228,489 + +0.8 5,228,489 + +1.8 5,228,489 + +0.1 5,228,489 + -0.7 5,228,489 + +0.5 5,228,489 + -0.8 5,228,489 + +1.0 5,228,489 + +1.7 5,228,489 + -2.1 5,228,489 + +1.6 5,228,489 + +1.2 5,228,489 + -0.3 5,228,489 + -0.5 5,228,489 + +1.1 5,228,489 + -3.6 5,228,489 + -0.3 5,228,489 + +1.5 5,228,489 + +0.5 5,228,490 - -1.0 5,228,490 - -1.7 5,228,490 - -2.0 5,228,490 - +0.0 5,228,490 - -1.4 5,228,490 - -1.5 5,228,490 - -0.5 5,228,490 - +2.4 5,228,490 - +0.8 5,228,490 - -0.5 5,228,490 - +1.7 5,228,490 - -1.3 5,228,490 - -1.7 5,228,501 + -0.0 5,228,502 - -1.4 5,228,502 - -1.8 5,228,502 - -0.7 5,228,508 + -1.4 5,228,508 + +0.0 5,228,508 + -0.7 5,228,508 + -2.0 5,228,508 + -1.4 5,228,524 + +0.6 5,228,524 + -1.0 5,228,524 + -0.2 5,228,524 + -0.3 5,228,648 - -1.4 5,228,680 + PFLU_RS23295 0.12 -2.4 5,228,680 + PFLU_RS23295 0.12 -1.8 5,228,680 + PFLU_RS23295 0.12 +0.2 5,228,681 - PFLU_RS23295 0.12 -1.4 5,228,699 + PFLU_RS23295 0.13 -1.7 5,228,851 + PFLU_RS23295 0.24 -0.1 5,228,851 + PFLU_RS23295 0.24 -0.5 5,228,944 + PFLU_RS23295 0.31 -0.5 5,228,944 + PFLU_RS23295 0.31 -1.1 5,228,944 + PFLU_RS23295 0.31 -0.1 5,228,944 + PFLU_RS23295 0.31 +0.2 5,228,944 + PFLU_RS23295 0.31 -1.4 5,228,945 - PFLU_RS23295 0.31 -1.8 5,228,945 - PFLU_RS23295 0.31 -0.6 5,229,079 + PFLU_RS23295 0.41 -0.5 5,229,079 + PFLU_RS23295 0.41 -0.8 5,229,080 - PFLU_RS23295 0.41 -0.1 5,229,080 - PFLU_RS23295 0.41 -2.0 5,229,080 - PFLU_RS23295 0.41 -0.0 5,229,080 - PFLU_RS23295 0.41 -1.6 5,229,080 - PFLU_RS23295 0.41 -0.6 5,229,080 - PFLU_RS23295 0.41 +2.5 5,229,080 - PFLU_RS23295 0.41 -1.1 5,229,080 - PFLU_RS23295 0.41 -3.0 5,229,080 - PFLU_RS23295 0.41 -2.0 5,229,080 - PFLU_RS23295 0.41 -1.6 5,229,080 - PFLU_RS23295 0.41 -0.2 5,229,080 - PFLU_RS23295 0.41 -0.8 5,229,163 + PFLU_RS23295 0.48 +0.5 5,229,163 + PFLU_RS23295 0.48 -0.5 5,229,163 + PFLU_RS23295 0.48 +0.2 5,229,164 - PFLU_RS23295 0.48 -0.5 5,229,164 - PFLU_RS23295 0.48 -0.1 5,229,164 - PFLU_RS23295 0.48 -0.9 5,229,164 - PFLU_RS23295 0.48 -0.4 5,229,239 - PFLU_RS23295 0.53 +0.6 5,229,283 + PFLU_RS23295 0.56 -0.5 5,229,284 - PFLU_RS23295 0.56 +0.2 5,229,284 - PFLU_RS23295 0.56 +1.0 5,229,314 - PFLU_RS23295 0.59 -0.3 5,229,463 + PFLU_RS23295 0.70 -1.2 5,229,463 + PFLU_RS23295 0.70 -2.1 5,229,464 - PFLU_RS23295 0.70 -1.5 5,229,464 - PFLU_RS23295 0.70 -0.0 5,229,817 + +0.4 5,229,817 + -0.6 5,229,817 + -0.0 5,229,817 + -0.2 5,229,817 + -1.7 5,229,817 + -0.2 5,229,818 - +0.1 5,229,821 + -0.3 5,229,821 + +0.4 5,229,821 + -2.4 5,229,821 + -2.0 5,229,822 - -1.5 5,229,822 - +0.2 5,229,822 - +0.5 5,229,837 + -0.2 5,229,837 + +0.3 5,229,837 + -0.1 5,229,838 - -0.9 5,229,838 - -1.5 5,229,838 - -0.6 5,229,859 + -1.5 5,229,859 + +0.0 5,229,859 + +0.8 5,229,859 + -0.6 5,229,860 - +0.3 5,229,860 - -1.0 5,229,860 - -1.9 5,229,893 + -0.1 5,229,894 - -2.4 5,229,894 - -0.3 5,229,894 - -1.3 5,229,894 - -0.5 5,229,894 - -1.7 5,229,894 - +1.5 5,229,902 - +0.6 5,229,902 - -0.9 5,229,902 - -0.4 5,229,902 - +1.5 5,229,902 - -1.3 5,229,902 - +0.5 5,229,912 - +0.8 5,230,034 + -1.3 5,230,034 + +1.3 5,230,035 - -0.5 5,230,035 - +1.2 5,230,115 + +0.6 5,230,116 - -1.2 5,230,116 - -0.5 5,230,116 - +0.8 5,230,127 + -1.3 5,230,128 - +1.6 5,230,128 - +0.6 5,230,128 - -0.6 5,230,130 + +0.9 5,230,130 + +0.4 5,230,130 + +0.5 5,230,130 + +1.1 5,230,130 + -0.2 5,230,131 - +1.3 5,230,131 - +0.3 5,230,131 - +0.5 5,230,131 - +0.8 5,230,131 - -0.5 5,230,131 - +0.8 5,230,163 - -0.2 5,230,163 - +1.3 5,230,254 - PFLU_RS23300 0.15 +0.2 5,230,686 + PFLU_RS23300 0.45 +0.3 5,230,687 - PFLU_RS23300 0.45 +0.8 5,230,687 - PFLU_RS23300 0.45 +0.7 5,230,701 + PFLU_RS23300 0.46 -0.5 5,230,701 + PFLU_RS23300 0.46 -0.2 5,230,709 + PFLU_RS23300 0.46 -0.8 5,230,709 + PFLU_RS23300 0.46 -0.8 5,230,709 + PFLU_RS23300 0.46 +5.0 5,230,709 + PFLU_RS23300 0.46 -0.8 5,230,710 - PFLU_RS23300 0.46 -0.2 5,230,710 - PFLU_RS23300 0.46 -0.1 5,230,710 - PFLU_RS23300 0.46 +1.7
Or see this region's nucleotide sequence