Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005990

Experiment: Indole-3-pyruvic 5 mM in soil extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Indole-3-pyruvic 5 mM in soil extract
2,310,968	+		ABIE53_005988	0.14	-0.1
2,310,968	+		ABIE53_005988	0.14	-1.1
2,310,968	+		ABIE53_005988	0.14	-0.3
2,310,968	+		ABIE53_005988	0.14	-1.3
2,310,968	+		ABIE53_005988	0.14	+4.2
2,310,969	-		ABIE53_005988	0.15	+1.4
2,310,969	-		ABIE53_005988	0.15	-0.2
2,310,969	-		ABIE53_005988	0.15	-1.9
2,310,969	-		ABIE53_005988	0.15	-0.8
2,310,972	+		ABIE53_005988	0.15	-1.0
2,310,972	+		ABIE53_005988	0.15	-2.3
2,310,972	+		ABIE53_005988	0.15	-0.6
2,310,972	+		ABIE53_005988	0.15	+2.2
2,310,972	+		ABIE53_005988	0.15	-1.8
2,310,972	+		ABIE53_005988	0.15	-0.4
2,310,972	+		ABIE53_005988	0.15	+0.9
2,310,973	-		ABIE53_005988	0.15	-1.2
2,310,973	-		ABIE53_005988	0.15	+0.1
2,310,973	-		ABIE53_005988	0.15	-0.2
2,310,973	-		ABIE53_005988	0.15	-3.3
2,310,973	-		ABIE53_005988	0.15	-1.1
2,310,973	-		ABIE53_005988	0.15	-0.7
2,311,095	+		ABIE53_005988	0.45	+0.2
2,311,095	+		ABIE53_005988	0.45	-0.9
2,311,096	-		ABIE53_005988	0.45	-1.8
2,311,132	-		ABIE53_005988	0.53	+4.5
2,311,304	+				-0.3
2,311,304	+				+1.1
2,311,304	+				+0.2
2,311,304	+				+0.2
2,311,304	+				+0.5
2,311,304	+				-0.6
2,311,304	+				+2.2
2,311,304	+				-0.3
2,311,304	+				-0.7
2,311,304	+				+0.9
2,311,305	-				+3.7
2,311,305	-				-1.4
2,311,305	-				-0.9
2,311,305	-				+0.3
2,311,345	-				+1.6
2,311,351	+				-0.2
2,311,351	+				-0.7
2,311,351	+				+0.2
2,311,351	+				+0.5
2,311,351	+				-0.3
2,311,353	+				+4.2
2,311,354	-				-2.7
2,311,651	+				-1.7
2,311,652	-				-1.0
2,311,661	+				-2.7
2,311,662	+				+0.4
2,311,662	+				+0.9
2,311,662	+				-0.6
2,311,757	-				+0.9
2,311,806	+				-2.0
2,311,806	+				-2.0
2,311,807	-				+0.4
2,311,807	-				+3.2
2,311,812	+				+0.6
2,311,812	+				-0.6
2,311,812	+				+0.7
2,311,812	+				+0.6
2,311,813	-				+2.2
2,311,820	-				-2.2
2,311,866	+				+1.4
2,311,866	+				+0.4
2,311,867	-				+1.1
2,311,867	-				-0.2
2,311,890	+				-0.2
2,311,891	-				+0.2
2,311,958	+				+0.6
2,311,958	+				-2.2
2,312,102	+		ABIE53_005990	0.54	-0.4
2,312,102	+		ABIE53_005990	0.54	+3.2
2,312,102	+		ABIE53_005990	0.54	+2.6
2,312,102	+		ABIE53_005990	0.54	+1.2
2,312,102	+		ABIE53_005990	0.54	+0.2
2,312,102	+		ABIE53_005990	0.54	-1.6
2,312,102	+		ABIE53_005990	0.54	-0.5
2,312,102	+		ABIE53_005990	0.54	+1.0
2,312,102	+		ABIE53_005990	0.54	-1.0
2,312,102	+		ABIE53_005990	0.54	+0.6
2,312,102	+		ABIE53_005990	0.54	-1.0
2,312,103	-		ABIE53_005990	0.54	-0.4
2,312,103	-		ABIE53_005990	0.54	+0.8
2,312,103	-		ABIE53_005990	0.54	+1.0
2,312,103	-		ABIE53_005990	0.54	+0.5
2,312,103	-		ABIE53_005990	0.54	+0.1
2,312,103	-		ABIE53_005990	0.54	-1.9
2,312,103	-		ABIE53_005990	0.54	+0.5
2,312,106	+		ABIE53_005990	0.55	-0.4
2,312,106	+		ABIE53_005990	0.55	+1.5
2,312,107	-		ABIE53_005990	0.55	-1.5
2,312,122	-		ABIE53_005990	0.60	+2.2
2,312,136	+		ABIE53_005990	0.65	+2.2
2,312,136	+		ABIE53_005990	0.65	-0.6
2,312,136	+		ABIE53_005990	0.65	-0.4
2,312,136	+		ABIE53_005990	0.65	-0.6
2,312,136	+		ABIE53_005990	0.65	-1.4
2,312,136	+		ABIE53_005990	0.65	-1.8
2,312,136	+		ABIE53_005990	0.65	+0.1
2,312,136	+		ABIE53_005990	0.65	-1.4
2,312,136	+		ABIE53_005990	0.65	-1.0
2,312,136	+		ABIE53_005990	0.65	+0.3
2,312,137	-		ABIE53_005990	0.65	-0.3
2,312,137	-		ABIE53_005990	0.65	+0.5
2,312,137	-		ABIE53_005990	0.65	-0.5
2,312,137	-		ABIE53_005990	0.65	+0.1
2,312,137	-		ABIE53_005990	0.65	-0.8
2,312,183	+		ABIE53_005990	0.81	+0.8
2,312,183	+		ABIE53_005990	0.81	-0.9
2,312,184	-		ABIE53_005990	0.81	+0.9
2,312,184	-		ABIE53_005990	0.81	+0.5
2,312,184	-		ABIE53_005990	0.81	-1.3
2,312,184	-		ABIE53_005990	0.81	-0.7
2,312,184	-		ABIE53_005990	0.81	-1.6
2,312,208	+		ABIE53_005990	0.89	-2.2
2,312,225	+				+3.5
2,312,225	+				-1.4
2,312,237	+				-0.2
2,312,237	+				+0.3
2,312,237	+				+1.6
2,312,237	+				+2.6
2,312,237	+				-0.6
2,312,237	+				+1.0
2,312,237	+				-0.2
2,312,237	+				+0.4
2,312,238	-				+2.2
2,312,238	-				+0.6
2,312,238	-				+0.9
2,312,292	+				-0.2
2,312,503	+		ABIE53_005991	0.13	-0.6
2,312,503	+		ABIE53_005991	0.13	-2.5
2,312,503	+		ABIE53_005991	0.13	-1.7
2,312,503	+		ABIE53_005991	0.13	+0.4
2,312,504	-		ABIE53_005991	0.13	+0.8
2,312,504	-		ABIE53_005991	0.13	-0.5
2,312,504	-		ABIE53_005991	0.13	+1.8
2,312,708	-		ABIE53_005991	0.27	-0.3
2,312,761	-		ABIE53_005991	0.31	-1.0
2,312,927	+		ABIE53_005991	0.43	-1.0
2,312,927	+		ABIE53_005991	0.43	-0.0
2,313,006	+		ABIE53_005991	0.48	-1.4
2,313,006	+		ABIE53_005991	0.48	-1.3
2,313,006	+		ABIE53_005991	0.48	-0.4
2,313,006	+		ABIE53_005991	0.48	+0.2
2,313,007	-		ABIE53_005991	0.48	-0.1
2,313,007	-		ABIE53_005991	0.48	+0.5
2,313,007	-		ABIE53_005991	0.48	-0.7
2,313,007	-		ABIE53_005991	0.48	-0.2
2,313,011	+		ABIE53_005991	0.49	-1.7
2,313,012	-		ABIE53_005991	0.49	+0.1
2,313,012	-		ABIE53_005991	0.49	+1.2
2,313,012	-		ABIE53_005991	0.49	-0.8
2,313,190	+		ABIE53_005991	0.61	+1.2
2,313,190	+		ABIE53_005991	0.61	-0.9
2,313,190	+		ABIE53_005991	0.61	-0.2
2,313,191	-		ABIE53_005991	0.61	+0.2
2,313,191	-		ABIE53_005991	0.61	-1.1
2,313,191	-		ABIE53_005991	0.61	+2.2
2,313,191	-		ABIE53_005991	0.61	-1.2
2,313,191	-		ABIE53_005991	0.61	-1.8
2,313,191	-		ABIE53_005991	0.61	+0.3
2,313,227	+		ABIE53_005991	0.64	+1.0
2,313,227	+		ABIE53_005991	0.64	-0.1
2,313,227	+		ABIE53_005991	0.64	-0.3
2,313,227	+		ABIE53_005991	0.64	+0.7
2,313,227	+		ABIE53_005991	0.64	+0.8
2,313,227	+		ABIE53_005991	0.64	+2.2
2,313,228	-		ABIE53_005991	0.64	+0.0