Experiment: Indole-3-pyruvic 5 mM in soil extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004553 and ABIE53_004554 overlap by 4 nucleotides ABIE53_004554 and ABIE53_004555 overlap by 4 nucleotides ABIE53_004555 and ABIE53_004556 are separated by 31 nucleotides ABIE53_004556 and ABIE53_004557 are separated by 1 nucleotides
ABIE53_004553: ABIE53_004553 - anthraniloyl-CoA monooxygenase, at 740,393 to 742,765
_004553
ABIE53_004554: ABIE53_004554 - 3-hydroxybutyrate dehydrogenase, at 742,762 to 743,535
_004554
ABIE53_004555: ABIE53_004555 - DNA-binding MarR family transcriptional regulator, at 743,532 to 744,104
_004555
ABIE53_004556: ABIE53_004556 - enoyl-CoA hydratase/carnithine racemase, at 744,136 to 744,987
_004556
ABIE53_004557: ABIE53_004557 - acyl-CoA dehydrogenase, at 744,989 to 746,221
_004557
Position (kb) 743
744
745 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 742.617 kb on + strand at 742.617 kb on + strand at 742.617 kb on + strand at 742.617 kb on + strand at 742.617 kb on + strand at 742.632 kb on + strand at 742.633 kb on - strand at 742.633 kb on - strand at 742.649 kb on + strand at 742.649 kb on + strand at 742.995 kb on + strand, within ABIE53_004554 at 743.015 kb on + strand, within ABIE53_004554 at 743.015 kb on + strand, within ABIE53_004554 at 743.015 kb on + strand, within ABIE53_004554 at 743.015 kb on + strand, within ABIE53_004554 at 743.016 kb on - strand, within ABIE53_004554 at 743.062 kb on - strand, within ABIE53_004554 at 743.203 kb on + strand, within ABIE53_004554 at 743.209 kb on + strand, within ABIE53_004554 at 743.209 kb on + strand, within ABIE53_004554 at 743.209 kb on + strand, within ABIE53_004554 at 743.209 kb on + strand, within ABIE53_004554 at 743.210 kb on - strand, within ABIE53_004554 at 743.210 kb on - strand, within ABIE53_004554 at 743.210 kb on - strand, within ABIE53_004554 at 743.210 kb on - strand, within ABIE53_004554 at 743.210 kb on - strand, within ABIE53_004554 at 743.210 kb on - strand, within ABIE53_004554 at 743.468 kb on + strand at 743.468 kb on + strand at 743.469 kb on - strand at 743.469 kb on - strand at 743.469 kb on - strand at 744.065 kb on + strand at 744.090 kb on - strand at 744.103 kb on - strand at 744.126 kb on - strand at 744.162 kb on - strand at 744.164 kb on + strand at 744.289 kb on + strand, within ABIE53_004556 at 744.290 kb on - strand, within ABIE53_004556 at 744.290 kb on - strand, within ABIE53_004556 at 744.320 kb on + strand, within ABIE53_004556 at 744.321 kb on - strand, within ABIE53_004556 at 744.321 kb on - strand, within ABIE53_004556 at 744.325 kb on + strand, within ABIE53_004556 at 744.325 kb on + strand, within ABIE53_004556 at 744.326 kb on - strand, within ABIE53_004556 at 744.326 kb on - strand, within ABIE53_004556 at 744.326 kb on - strand, within ABIE53_004556 at 744.570 kb on + strand, within ABIE53_004556 at 744.571 kb on - strand, within ABIE53_004556 at 744.739 kb on + strand, within ABIE53_004556 at 744.739 kb on + strand, within ABIE53_004556 at 745.018 kb on + strand at 745.019 kb on - strand at 745.098 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM in soil extract remove 742,617 + -2.0 742,617 + -1.7 742,617 + -1.1 742,617 + -1.4 742,617 + -0.6 742,632 + -0.9 742,633 - -1.2 742,633 - -2.1 742,649 + -1.6 742,649 + -0.8 742,995 + ABIE53_004554 0.30 -2.6 743,015 + ABIE53_004554 0.33 -1.2 743,015 + ABIE53_004554 0.33 -3.2 743,015 + ABIE53_004554 0.33 -1.6 743,015 + ABIE53_004554 0.33 +1.4 743,016 - ABIE53_004554 0.33 -0.4 743,062 - ABIE53_004554 0.39 -1.7 743,203 + ABIE53_004554 0.57 -0.6 743,209 + ABIE53_004554 0.58 -0.9 743,209 + ABIE53_004554 0.58 -2.7 743,209 + ABIE53_004554 0.58 +0.1 743,209 + ABIE53_004554 0.58 -2.1 743,210 - ABIE53_004554 0.58 -1.4 743,210 - ABIE53_004554 0.58 -2.2 743,210 - ABIE53_004554 0.58 -1.5 743,210 - ABIE53_004554 0.58 -0.4 743,210 - ABIE53_004554 0.58 -1.1 743,210 - ABIE53_004554 0.58 -1.7 743,468 + -0.6 743,468 + -1.1 743,469 - -2.7 743,469 - -0.9 743,469 - +0.2 744,065 + +6.1 744,090 - -1.0 744,103 - -0.7 744,126 - +2.4 744,162 - -0.0 744,164 + +0.6 744,289 + ABIE53_004556 0.18 -0.4 744,290 - ABIE53_004556 0.18 +0.0 744,290 - ABIE53_004556 0.18 -1.3 744,320 + ABIE53_004556 0.22 +0.4 744,321 - ABIE53_004556 0.22 -0.3 744,321 - ABIE53_004556 0.22 +1.6 744,325 + ABIE53_004556 0.22 +0.2 744,325 + ABIE53_004556 0.22 +0.1 744,326 - ABIE53_004556 0.22 +2.9 744,326 - ABIE53_004556 0.22 -1.4 744,326 - ABIE53_004556 0.22 +1.0 744,570 + ABIE53_004556 0.51 -1.4 744,571 - ABIE53_004556 0.51 +1.4 744,739 + ABIE53_004556 0.71 -2.3 744,739 + ABIE53_004556 0.71 +0.9 745,018 + +0.9 745,019 - -1.1 745,098 + -1.9
Or see this region's nucleotide sequence