Experiment: Indole-3-pyruvic 5 mM in soil extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000693 and ABIE53_000694 are separated by 127 nucleotides ABIE53_000694 and ABIE53_000695 are separated by 360 nucleotides ABIE53_000695 and ABIE53_000696 are separated by 39 nucleotides
ABIE53_000693: ABIE53_000693 - PTS system N-acetylglucosamine-specific IIC component, at 748,122 to 749,897
_000693
ABIE53_000694: ABIE53_000694 - RNA polymerase sigma-32 factor, at 750,025 to 750,960
_000694
ABIE53_000695: ABIE53_000695 - lipid A 3-O-deacylase, at 751,321 to 751,884
_000695
ABIE53_000696: ABIE53_000696 - ketosteroid isomerase-like protein, at 751,924 to 752,307
_000696
Position (kb) 750
751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 749.097 kb on + strand, within ABIE53_000693 at 749.097 kb on + strand, within ABIE53_000693 at 749.097 kb on + strand, within ABIE53_000693 at 749.098 kb on - strand, within ABIE53_000693 at 749.098 kb on - strand, within ABIE53_000693 at 749.098 kb on - strand, within ABIE53_000693 at 749.098 kb on - strand, within ABIE53_000693 at 749.109 kb on + strand, within ABIE53_000693 at 749.109 kb on + strand, within ABIE53_000693 at 749.109 kb on + strand, within ABIE53_000693 at 749.109 kb on + strand, within ABIE53_000693 at 749.110 kb on - strand, within ABIE53_000693 at 749.110 kb on - strand, within ABIE53_000693 at 749.110 kb on - strand, within ABIE53_000693 at 749.111 kb on - strand, within ABIE53_000693 at 749.158 kb on - strand, within ABIE53_000693 at 749.158 kb on - strand, within ABIE53_000693 at 749.169 kb on + strand, within ABIE53_000693 at 749.169 kb on + strand, within ABIE53_000693 at 749.169 kb on + strand, within ABIE53_000693 at 749.169 kb on + strand, within ABIE53_000693 at 749.169 kb on + strand, within ABIE53_000693 at 749.169 kb on + strand, within ABIE53_000693 at 749.169 kb on + strand, within ABIE53_000693 at 749.169 kb on + strand, within ABIE53_000693 at 749.169 kb on + strand, within ABIE53_000693 at 749.170 kb on - strand, within ABIE53_000693 at 749.170 kb on - strand, within ABIE53_000693 at 749.170 kb on - strand, within ABIE53_000693 at 749.170 kb on - strand, within ABIE53_000693 at 749.170 kb on - strand, within ABIE53_000693 at 749.170 kb on - strand, within ABIE53_000693 at 749.170 kb on - strand, within ABIE53_000693 at 749.170 kb on - strand, within ABIE53_000693 at 749.171 kb on - strand, within ABIE53_000693 at 749.173 kb on - strand, within ABIE53_000693 at 749.173 kb on - strand, within ABIE53_000693 at 749.173 kb on - strand, within ABIE53_000693 at 749.173 kb on - strand, within ABIE53_000693 at 749.207 kb on + strand, within ABIE53_000693 at 749.207 kb on + strand, within ABIE53_000693 at 749.208 kb on - strand, within ABIE53_000693 at 749.208 kb on - strand, within ABIE53_000693 at 749.208 kb on - strand, within ABIE53_000693 at 749.319 kb on + strand, within ABIE53_000693 at 749.319 kb on + strand, within ABIE53_000693 at 749.319 kb on + strand, within ABIE53_000693 at 749.320 kb on - strand, within ABIE53_000693 at 749.320 kb on - strand, within ABIE53_000693 at 749.320 kb on - strand, within ABIE53_000693 at 749.320 kb on - strand, within ABIE53_000693 at 749.320 kb on - strand, within ABIE53_000693 at 749.321 kb on + strand, within ABIE53_000693 at 749.321 kb on + strand, within ABIE53_000693 at 749.321 kb on + strand, within ABIE53_000693 at 749.322 kb on - strand, within ABIE53_000693 at 749.322 kb on - strand, within ABIE53_000693 at 749.479 kb on + strand, within ABIE53_000693 at 749.479 kb on + strand, within ABIE53_000693 at 749.479 kb on + strand, within ABIE53_000693 at 749.479 kb on + strand, within ABIE53_000693 at 749.480 kb on - strand, within ABIE53_000693 at 749.480 kb on - strand, within ABIE53_000693 at 749.480 kb on - strand, within ABIE53_000693 at 749.480 kb on - strand, within ABIE53_000693 at 749.480 kb on - strand, within ABIE53_000693 at 749.480 kb on - strand, within ABIE53_000693 at 749.480 kb on - strand, within ABIE53_000693 at 749.480 kb on - strand, within ABIE53_000693 at 749.480 kb on - strand, within ABIE53_000693 at 749.575 kb on + strand, within ABIE53_000693 at 749.576 kb on - strand, within ABIE53_000693 at 749.576 kb on - strand, within ABIE53_000693 at 749.576 kb on - strand, within ABIE53_000693 at 749.576 kb on - strand, within ABIE53_000693 at 749.576 kb on - strand, within ABIE53_000693 at 749.576 kb on - strand, within ABIE53_000693 at 749.576 kb on - strand, within ABIE53_000693 at 749.723 kb on + strand at 749.723 kb on + strand at 749.807 kb on + strand at 749.959 kb on - strand at 749.961 kb on - strand at 750.001 kb on + strand at 750.001 kb on + strand at 750.001 kb on + strand at 750.001 kb on + strand at 750.002 kb on - strand at 750.002 kb on - strand at 750.002 kb on - strand at 750.002 kb on - strand at 750.010 kb on + strand at 750.011 kb on - strand at 750.026 kb on + strand at 750.027 kb on - strand at 750.033 kb on - strand at 750.033 kb on - strand at 750.033 kb on - strand at 750.033 kb on - strand at 751.023 kb on + strand at 751.024 kb on - strand at 751.024 kb on - strand at 751.024 kb on - strand at 751.046 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.049 kb on + strand at 751.050 kb on - strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.053 kb on + strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.054 kb on - strand at 751.063 kb on - strand at 751.109 kb on + strand at 751.148 kb on + strand at 751.148 kb on + strand at 751.156 kb on - strand at 751.215 kb on + strand at 751.215 kb on + strand at 751.215 kb on + strand at 751.216 kb on - strand at 751.216 kb on - strand at 751.216 kb on - strand at 751.238 kb on + strand at 751.239 kb on - strand at 751.269 kb on - strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.273 kb on + strand at 751.274 kb on - strand at 751.286 kb on + strand at 751.286 kb on + strand at 751.358 kb on + strand at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.563 kb on + strand, within ABIE53_000695 at 751.564 kb on - strand, within ABIE53_000695 at 751.614 kb on + strand, within ABIE53_000695 at 751.614 kb on + strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.615 kb on - strand, within ABIE53_000695 at 751.783 kb on + strand, within ABIE53_000695 at 751.784 kb on - strand, within ABIE53_000695 at 751.845 kb on + strand at 751.845 kb on + strand at 751.846 kb on - strand at 751.847 kb on + strand at 751.848 kb on - strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.862 kb on + strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.863 kb on - strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.864 kb on + strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.865 kb on - strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.873 kb on + strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.874 kb on - strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.875 kb on + strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.876 kb on - strand at 751.908 kb on + strand at 751.908 kb on + strand at 751.908 kb on + strand at 751.909 kb on - strand at 751.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Indole-3-pyruvic 5 mM in soil extract remove 749,097 + ABIE53_000693 0.55 -0.5 749,097 + ABIE53_000693 0.55 -1.6 749,097 + ABIE53_000693 0.55 -1.1 749,098 - ABIE53_000693 0.55 +0.9 749,098 - ABIE53_000693 0.55 +0.2 749,098 - ABIE53_000693 0.55 -1.3 749,098 - ABIE53_000693 0.55 +0.1 749,109 + ABIE53_000693 0.56 -0.2 749,109 + ABIE53_000693 0.56 -0.5 749,109 + ABIE53_000693 0.56 +1.4 749,109 + ABIE53_000693 0.56 +0.3 749,110 - ABIE53_000693 0.56 -0.8 749,110 - ABIE53_000693 0.56 +1.5 749,110 - ABIE53_000693 0.56 +1.7 749,111 - ABIE53_000693 0.56 +3.5 749,158 - ABIE53_000693 0.58 -0.5 749,158 - ABIE53_000693 0.58 +0.2 749,169 + ABIE53_000693 0.59 +0.7 749,169 + ABIE53_000693 0.59 -0.1 749,169 + ABIE53_000693 0.59 +1.5 749,169 + ABIE53_000693 0.59 +0.3 749,169 + ABIE53_000693 0.59 -1.1 749,169 + ABIE53_000693 0.59 -0.3 749,169 + ABIE53_000693 0.59 -0.7 749,169 + ABIE53_000693 0.59 -1.0 749,169 + ABIE53_000693 0.59 +2.5 749,170 - ABIE53_000693 0.59 -1.8 749,170 - ABIE53_000693 0.59 +0.6 749,170 - ABIE53_000693 0.59 +3.4 749,170 - ABIE53_000693 0.59 -2.3 749,170 - ABIE53_000693 0.59 +0.7 749,170 - ABIE53_000693 0.59 -0.3 749,170 - ABIE53_000693 0.59 -1.8 749,170 - ABIE53_000693 0.59 -0.1 749,171 - ABIE53_000693 0.59 -0.5 749,173 - ABIE53_000693 0.59 +0.4 749,173 - ABIE53_000693 0.59 -2.3 749,173 - ABIE53_000693 0.59 +1.0 749,173 - ABIE53_000693 0.59 -2.8 749,207 + ABIE53_000693 0.61 +4.1 749,207 + ABIE53_000693 0.61 -0.7 749,208 - ABIE53_000693 0.61 -1.4 749,208 - ABIE53_000693 0.61 -0.9 749,208 - ABIE53_000693 0.61 -1.0 749,319 + ABIE53_000693 0.67 +1.5 749,319 + ABIE53_000693 0.67 +0.5 749,319 + ABIE53_000693 0.67 +0.5 749,320 - ABIE53_000693 0.67 +0.1 749,320 - ABIE53_000693 0.67 +2.1 749,320 - ABIE53_000693 0.67 +0.1 749,320 - ABIE53_000693 0.67 +3.8 749,320 - ABIE53_000693 0.67 +2.5 749,321 + ABIE53_000693 0.68 -1.3 749,321 + ABIE53_000693 0.68 -1.8 749,321 + ABIE53_000693 0.68 +0.9 749,322 - ABIE53_000693 0.68 -0.7 749,322 - ABIE53_000693 0.68 +0.6 749,479 + ABIE53_000693 0.76 -1.3 749,479 + ABIE53_000693 0.76 -1.6 749,479 + ABIE53_000693 0.76 -0.8 749,479 + ABIE53_000693 0.76 -2.1 749,480 - ABIE53_000693 0.76 +0.0 749,480 - ABIE53_000693 0.76 -0.1 749,480 - ABIE53_000693 0.76 -0.2 749,480 - ABIE53_000693 0.76 +1.1 749,480 - ABIE53_000693 0.76 +3.0 749,480 - ABIE53_000693 0.76 -2.4 749,480 - ABIE53_000693 0.76 -0.5 749,480 - ABIE53_000693 0.76 +0.9 749,480 - ABIE53_000693 0.76 +1.4 749,575 + ABIE53_000693 0.82 -0.4 749,576 - ABIE53_000693 0.82 +0.2 749,576 - ABIE53_000693 0.82 -2.0 749,576 - ABIE53_000693 0.82 +0.7 749,576 - ABIE53_000693 0.82 -0.7 749,576 - ABIE53_000693 0.82 +0.7 749,576 - ABIE53_000693 0.82 -1.3 749,576 - ABIE53_000693 0.82 -0.6 749,723 + -0.7 749,723 + +4.5 749,807 + -0.1 749,959 - +2.5 749,961 - +0.4 750,001 + +0.3 750,001 + -0.6 750,001 + +0.3 750,001 + -0.1 750,002 - -0.2 750,002 - +1.2 750,002 - +0.6 750,002 - +2.5 750,010 + +1.1 750,011 - +1.0 750,026 + +3.0 750,027 - +0.3 750,033 - -0.5 750,033 - -0.7 750,033 - +0.4 750,033 - +0.8 751,023 + -0.2 751,024 - +1.1 751,024 - +1.4 751,024 - -0.8 751,046 + +3.5 751,049 + +5.3 751,049 + +2.8 751,049 + +1.8 751,049 + +3.7 751,049 + +2.7 751,049 + +3.6 751,050 - +1.1 751,053 + +1.4 751,053 + +1.0 751,053 + +2.5 751,053 + +2.9 751,053 + +1.2 751,053 + +2.3 751,054 - +0.5 751,054 - -0.2 751,054 - +1.4 751,054 - +2.7 751,054 - +1.6 751,054 - +1.0 751,063 - +0.3 751,109 + +1.8 751,148 + +2.8 751,148 + +3.6 751,156 - +0.4 751,215 + +2.4 751,215 + +2.1 751,215 + +2.9 751,216 - -0.0 751,216 - -0.4 751,216 - -0.7 751,238 + +2.1 751,239 - -1.1 751,269 - +0.9 751,273 + +1.8 751,273 + +0.6 751,273 + +0.6 751,273 + +1.4 751,273 + +2.1 751,274 - +0.9 751,286 + +1.3 751,286 + -0.8 751,358 + -0.2 751,563 + ABIE53_000695 0.43 -0.5 751,563 + ABIE53_000695 0.43 -3.1 751,563 + ABIE53_000695 0.43 -2.8 751,563 + ABIE53_000695 0.43 -1.6 751,564 - ABIE53_000695 0.43 +0.9 751,614 + ABIE53_000695 0.52 -1.3 751,614 + ABIE53_000695 0.52 -0.2 751,615 - ABIE53_000695 0.52 +2.5 751,615 - ABIE53_000695 0.52 -1.7 751,615 - ABIE53_000695 0.52 -3.3 751,615 - ABIE53_000695 0.52 -0.7 751,783 + ABIE53_000695 0.82 -1.2 751,784 - ABIE53_000695 0.82 -0.2 751,845 + +0.2 751,845 + +3.5 751,846 - +2.5 751,847 + -2.0 751,848 - -1.9 751,862 + -0.6 751,862 + -0.5 751,862 + -0.8 751,862 + -0.8 751,862 + -2.1 751,862 + -1.0 751,862 + -1.3 751,862 + -2.3 751,862 + -2.5 751,862 + -1.1 751,862 + +0.6 751,862 + -1.9 751,863 - -2.3 751,863 - +2.5 751,863 - -1.4 751,863 - -1.3 751,863 - -1.2 751,863 - -0.1 751,863 - -1.6 751,863 - -0.5 751,863 - -1.4 751,863 - -2.4 751,863 - -2.9 751,863 - -2.0 751,863 - -1.8 751,863 - -2.8 751,863 - -1.1 751,863 - -1.3 751,863 - -2.2 751,863 - -2.2 751,863 - -1.7 751,863 - -2.3 751,864 + +1.2 751,864 + -1.0 751,864 + -0.8 751,864 + -1.9 751,864 + -3.3 751,864 + +0.3 751,864 + -0.2 751,864 + +1.5 751,864 + -1.1 751,864 + -2.7 751,864 + -0.3 751,864 + -1.6 751,864 + +1.8 751,865 - -1.6 751,865 - -1.4 751,865 - -1.5 751,865 - -0.8 751,865 - +0.5 751,865 - -1.3 751,865 - -1.8 751,865 - -2.6 751,865 - +0.5 751,865 - -0.5 751,865 - -0.8 751,873 + -0.8 751,873 + -1.9 751,873 + -2.0 751,873 + -0.8 751,873 + -1.5 751,873 + -0.5 751,873 + -2.1 751,873 + -2.0 751,873 + -2.1 751,874 - +0.2 751,874 - -1.1 751,874 - -1.5 751,874 - -2.3 751,874 - +2.5 751,874 - -2.9 751,874 - -2.4 751,874 - -1.8 751,874 - +2.3 751,874 - -1.8 751,874 - -1.7 751,874 - -0.6 751,875 + -1.6 751,875 + -2.2 751,875 + -2.6 751,875 + -1.1 751,875 + -2.1 751,876 - +1.5 751,876 - -1.9 751,876 - -1.1 751,876 - +3.5 751,876 - -1.5 751,876 - +0.3 751,876 - +0.5 751,876 - -1.5 751,876 - -0.5 751,876 - -2.0 751,876 - -2.2 751,908 + -0.6 751,908 + +4.8 751,908 + -1.4 751,909 - -0.7 751,909 - -0.2
Or see this region's nucleotide sequence