Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27050 and BWI76_RS27055 overlap by 59 nucleotides BWI76_RS27055 and BWI76_RS27060 are separated by 80 nucleotides BWI76_RS27060 and BWI76_RS27065 are separated by 173 nucleotides
BWI76_RS27050: BWI76_RS27050 - hypothetical protein, at 5,613,316 to 5,614,143
_RS27050
BWI76_RS27055: BWI76_RS27055 - hypothetical protein, at 5,614,085 to 5,614,378
_RS27055
BWI76_RS27060: BWI76_RS27060 - alpha-amylase, at 5,614,459 to 5,616,492
_RS27060
BWI76_RS27065: BWI76_RS27065 - valine--pyruvate transaminase, at 5,616,666 to 5,617,925
_RS27065
Position (kb) 5614
5615
5616
5617 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5613.679 kb on - strand, within BWI76_RS27050 at 5613.698 kb on + strand, within BWI76_RS27050 at 5613.874 kb on + strand, within BWI76_RS27050 at 5613.877 kb on - strand, within BWI76_RS27050 at 5614.122 kb on - strand at 5614.385 kb on - strand at 5614.449 kb on + strand at 5614.500 kb on + strand at 5614.500 kb on + strand at 5614.657 kb on - strand at 5614.657 kb on - strand at 5614.672 kb on - strand, within BWI76_RS27060 at 5614.675 kb on - strand, within BWI76_RS27060 at 5614.762 kb on - strand, within BWI76_RS27060 at 5614.850 kb on + strand, within BWI76_RS27060 at 5614.858 kb on - strand, within BWI76_RS27060 at 5615.031 kb on + strand, within BWI76_RS27060 at 5615.205 kb on - strand, within BWI76_RS27060 at 5615.266 kb on + strand, within BWI76_RS27060 at 5615.298 kb on - strand, within BWI76_RS27060 at 5615.303 kb on - strand, within BWI76_RS27060 at 5615.313 kb on - strand, within BWI76_RS27060 at 5615.419 kb on + strand, within BWI76_RS27060 at 5615.419 kb on + strand, within BWI76_RS27060 at 5615.447 kb on - strand, within BWI76_RS27060 at 5615.530 kb on + strand, within BWI76_RS27060 at 5615.532 kb on - strand, within BWI76_RS27060 at 5615.540 kb on + strand, within BWI76_RS27060 at 5615.700 kb on + strand, within BWI76_RS27060 at 5615.710 kb on - strand, within BWI76_RS27060 at 5615.760 kb on + strand, within BWI76_RS27060 at 5615.971 kb on + strand, within BWI76_RS27060 at 5616.033 kb on - strand, within BWI76_RS27060 at 5616.061 kb on + strand, within BWI76_RS27060 at 5616.155 kb on + strand, within BWI76_RS27060 at 5616.159 kb on - strand, within BWI76_RS27060 at 5616.215 kb on + strand, within BWI76_RS27060 at 5616.220 kb on + strand, within BWI76_RS27060 at 5616.220 kb on + strand, within BWI76_RS27060 at 5616.287 kb on - strand, within BWI76_RS27060 at 5616.346 kb on - strand at 5616.366 kb on + strand at 5616.427 kb on + strand at 5616.479 kb on - strand at 5616.481 kb on + strand at 5616.628 kb on - strand at 5616.842 kb on - strand, within BWI76_RS27065 at 5616.887 kb on + strand, within BWI76_RS27065 at 5616.902 kb on + strand, within BWI76_RS27065 at 5616.909 kb on - strand, within BWI76_RS27065 at 5617.003 kb on + strand, within BWI76_RS27065 at 5617.140 kb on - strand, within BWI76_RS27065 at 5617.234 kb on + strand, within BWI76_RS27065 at 5617.350 kb on + strand, within BWI76_RS27065
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 5,613,679 - BWI76_RS27050 0.44 -0.6 5,613,698 + BWI76_RS27050 0.46 +0.6 5,613,874 + BWI76_RS27050 0.67 +0.2 5,613,877 - BWI76_RS27050 0.68 +1.0 5,614,122 - +0.3 5,614,385 - -0.5 5,614,449 + -0.4 5,614,500 + -1.3 5,614,500 + -1.1 5,614,657 - -2.0 5,614,657 - +0.3 5,614,672 - BWI76_RS27060 0.10 +0.8 5,614,675 - BWI76_RS27060 0.11 +0.1 5,614,762 - BWI76_RS27060 0.15 +1.5 5,614,850 + BWI76_RS27060 0.19 +0.6 5,614,858 - BWI76_RS27060 0.20 -0.4 5,615,031 + BWI76_RS27060 0.28 -1.3 5,615,205 - BWI76_RS27060 0.37 +0.2 5,615,266 + BWI76_RS27060 0.40 +0.8 5,615,298 - BWI76_RS27060 0.41 +0.3 5,615,303 - BWI76_RS27060 0.41 +0.5 5,615,313 - BWI76_RS27060 0.42 +1.3 5,615,419 + BWI76_RS27060 0.47 +0.4 5,615,419 + BWI76_RS27060 0.47 -0.8 5,615,447 - BWI76_RS27060 0.49 -1.8 5,615,530 + BWI76_RS27060 0.53 -0.2 5,615,532 - BWI76_RS27060 0.53 -0.5 5,615,540 + BWI76_RS27060 0.53 +0.2 5,615,700 + BWI76_RS27060 0.61 -0.2 5,615,710 - BWI76_RS27060 0.62 +0.4 5,615,760 + BWI76_RS27060 0.64 +0.2 5,615,971 + BWI76_RS27060 0.74 +0.1 5,616,033 - BWI76_RS27060 0.77 +2.5 5,616,061 + BWI76_RS27060 0.79 +0.5 5,616,155 + BWI76_RS27060 0.83 +0.4 5,616,159 - BWI76_RS27060 0.84 -0.2 5,616,215 + BWI76_RS27060 0.86 -2.1 5,616,220 + BWI76_RS27060 0.87 +0.4 5,616,220 + BWI76_RS27060 0.87 +0.4 5,616,287 - BWI76_RS27060 0.90 +0.3 5,616,346 - -0.2 5,616,366 + +0.5 5,616,427 + -0.2 5,616,479 - +2.5 5,616,481 + -1.1 5,616,628 - -0.8 5,616,842 - BWI76_RS27065 0.14 +0.2 5,616,887 + BWI76_RS27065 0.18 -1.1 5,616,902 + BWI76_RS27065 0.19 -1.3 5,616,909 - BWI76_RS27065 0.19 -0.2 5,617,003 + BWI76_RS27065 0.27 -0.4 5,617,140 - BWI76_RS27065 0.38 +1.6 5,617,234 + BWI76_RS27065 0.45 -1.1 5,617,350 + BWI76_RS27065 0.54 -0.3
Or see this region's nucleotide sequence