Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26030 and BWI76_RS26035 are separated by 35 nucleotides BWI76_RS26035 and BWI76_RS26040 overlap by 8 nucleotides BWI76_RS26040 and BWI76_RS26045 overlap by 4 nucleotides BWI76_RS26045 and BWI76_RS26050 are separated by 67 nucleotides
BWI76_RS26030: BWI76_RS26030 - cytosine deaminase, at 5,378,648 to 5,379,970
_RS26030
BWI76_RS26035: BWI76_RS26035 - hypothetical protein, at 5,380,006 to 5,380,218
_RS26035
BWI76_RS26040: BWI76_RS26040 - nitrite reductase large subunit, at 5,380,211 to 5,382,754
_RS26040
BWI76_RS26045: BWI76_RS26045 - nitrite reductase small subunit, at 5,382,751 to 5,383,077
_RS26045
BWI76_RS26050: BWI76_RS26050 - nitrite transporter NirC, at 5,383,145 to 5,383,954
_RS26050
Position (kb) 5380
5381
5382
5383 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5379.217 kb on + strand at 5379.449 kb on - strand, within BWI76_RS26030 at 5379.526 kb on - strand, within BWI76_RS26030 at 5379.580 kb on + strand, within BWI76_RS26030 at 5379.671 kb on - strand, within BWI76_RS26030 at 5379.951 kb on - strand at 5379.971 kb on - strand at 5380.398 kb on - strand at 5380.428 kb on + strand at 5380.428 kb on + strand at 5380.488 kb on + strand, within BWI76_RS26040 at 5380.740 kb on + strand, within BWI76_RS26040 at 5380.878 kb on - strand, within BWI76_RS26040 at 5381.113 kb on + strand, within BWI76_RS26040 at 5381.223 kb on + strand, within BWI76_RS26040 at 5381.223 kb on + strand, within BWI76_RS26040 at 5381.231 kb on - strand, within BWI76_RS26040 at 5381.252 kb on - strand, within BWI76_RS26040 at 5381.433 kb on + strand, within BWI76_RS26040 at 5381.462 kb on + strand, within BWI76_RS26040 at 5381.500 kb on + strand, within BWI76_RS26040 at 5381.663 kb on - strand, within BWI76_RS26040 at 5381.704 kb on - strand, within BWI76_RS26040 at 5381.730 kb on - strand, within BWI76_RS26040 at 5381.777 kb on - strand, within BWI76_RS26040 at 5382.201 kb on - strand, within BWI76_RS26040 at 5382.236 kb on - strand, within BWI76_RS26040 at 5382.285 kb on - strand, within BWI76_RS26040 at 5382.342 kb on + strand, within BWI76_RS26040 at 5382.533 kb on - strand at 5382.859 kb on + strand, within BWI76_RS26045 at 5383.007 kb on - strand, within BWI76_RS26045 at 5383.017 kb on - strand, within BWI76_RS26045 at 5383.124 kb on + strand at 5383.182 kb on - strand at 5383.182 kb on - strand at 5383.254 kb on + strand, within BWI76_RS26050 at 5383.262 kb on - strand, within BWI76_RS26050 at 5383.346 kb on + strand, within BWI76_RS26050 at 5383.354 kb on - strand, within BWI76_RS26050 at 5383.436 kb on - strand, within BWI76_RS26050 at 5383.447 kb on - strand, within BWI76_RS26050 at 5383.629 kb on - strand, within BWI76_RS26050 at 5383.703 kb on + strand, within BWI76_RS26050
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 5,379,217 + +1.1 5,379,449 - BWI76_RS26030 0.61 +1.1 5,379,526 - BWI76_RS26030 0.66 -0.4 5,379,580 + BWI76_RS26030 0.70 +0.4 5,379,671 - BWI76_RS26030 0.77 -0.1 5,379,951 - +1.1 5,379,971 - -0.2 5,380,398 - -0.3 5,380,428 + +1.1 5,380,428 + +1.1 5,380,488 + BWI76_RS26040 0.11 +0.2 5,380,740 + BWI76_RS26040 0.21 +2.1 5,380,878 - BWI76_RS26040 0.26 -3.8 5,381,113 + BWI76_RS26040 0.35 +0.7 5,381,223 + BWI76_RS26040 0.40 -0.5 5,381,223 + BWI76_RS26040 0.40 -0.0 5,381,231 - BWI76_RS26040 0.40 -0.3 5,381,252 - BWI76_RS26040 0.41 +2.8 5,381,433 + BWI76_RS26040 0.48 -0.9 5,381,462 + BWI76_RS26040 0.49 -1.2 5,381,500 + BWI76_RS26040 0.51 +1.8 5,381,663 - BWI76_RS26040 0.57 -0.6 5,381,704 - BWI76_RS26040 0.59 +0.7 5,381,730 - BWI76_RS26040 0.60 +0.5 5,381,777 - BWI76_RS26040 0.62 +0.2 5,382,201 - BWI76_RS26040 0.78 +4.1 5,382,236 - BWI76_RS26040 0.80 -0.0 5,382,285 - BWI76_RS26040 0.82 -0.2 5,382,342 + BWI76_RS26040 0.84 -1.5 5,382,533 - +0.3 5,382,859 + BWI76_RS26045 0.33 +0.5 5,383,007 - BWI76_RS26045 0.78 +0.1 5,383,017 - BWI76_RS26045 0.81 -0.9 5,383,124 + -1.9 5,383,182 - -0.1 5,383,182 - -0.3 5,383,254 + BWI76_RS26050 0.13 +0.3 5,383,262 - BWI76_RS26050 0.14 -0.2 5,383,346 + BWI76_RS26050 0.25 +0.9 5,383,354 - BWI76_RS26050 0.26 -0.4 5,383,436 - BWI76_RS26050 0.36 -0.5 5,383,447 - BWI76_RS26050 0.37 +1.1 5,383,629 - BWI76_RS26050 0.60 +1.1 5,383,703 + BWI76_RS26050 0.69 -0.9
Or see this region's nucleotide sequence