Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23925

Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23920 and BWI76_RS23925 are separated by 269 nucleotidesBWI76_RS23925 and BWI76_RS23930 are separated by 169 nucleotides BWI76_RS23920: BWI76_RS23920 - D-3-phosphoglycerate dehydrogenase, at 4,991,524 to 4,992,756 _RS23920 BWI76_RS23925: BWI76_RS23925 - ribose-5-phosphate isomerase, at 4,993,026 to 4,993,685 _RS23925 BWI76_RS23930: BWI76_RS23930 - transcriptional regulator ArgP, at 4,993,855 to 4,994,748 _RS23930 Position (kb) 4993 4994Strain fitness (log2 ratio) -3 -2 -1 0 1at 4992.264 kb on - strand, within BWI76_RS23920at 4992.658 kb on + strandat 4992.671 kb on + strandat 4992.746 kb on + strandat 4992.746 kb on + strandat 4992.802 kb on - strandat 4993.048 kb on + strandat 4993.057 kb on + strandat 4993.407 kb on + strand, within BWI76_RS23925at 4993.628 kb on + strandat 4993.845 kb on + strandat 4993.877 kb on - strandat 4993.885 kb on - strandat 4993.904 kb on + strandat 4994.015 kb on + strand, within BWI76_RS23930at 4994.269 kb on + strand, within BWI76_RS23930at 4994.288 kb on + strand, within BWI76_RS23930at 4994.357 kb on + strand, within BWI76_RS23930at 4994.402 kb on + strand, within BWI76_RS23930

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
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4,992,264 - BWI76_RS23920 0.60 +1.0
4,992,658 + -1.3
4,992,671 + -1.6
4,992,746 + -1.3
4,992,746 + -0.0
4,992,802 - +1.0
4,993,048 + -2.5
4,993,057 + -0.6
4,993,407 + BWI76_RS23925 0.58 -1.3
4,993,628 + -0.0
4,993,845 + -1.0
4,993,877 - +0.9
4,993,885 - +0.3
4,993,904 + +1.0
4,994,015 + BWI76_RS23930 0.18 -0.2
4,994,269 + BWI76_RS23930 0.46 -0.2
4,994,288 + BWI76_RS23930 0.48 -0.9
4,994,357 + BWI76_RS23930 0.56 -1.4
4,994,402 + BWI76_RS23930 0.61 -3.1

Or see this region's nucleotide sequence