Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23390 and BWI76_RS23395 are separated by 16 nucleotides BWI76_RS23395 and BWI76_RS23400 are separated by 71 nucleotides
BWI76_RS23390: BWI76_RS23390 - oligogalacturonide ABC transporter ATP-binding protein, at 4,877,096 to 4,878,223
_RS23390
BWI76_RS23395: BWI76_RS23395 - sugar ABC transporter substrate-binding protein, at 4,878,240 to 4,879,526
_RS23395
BWI76_RS23400: BWI76_RS23400 - oligogalacturonide lyase, at 4,879,598 to 4,880,725
_RS23400
Position (kb)
4878
4879
4880 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4877.402 kb on - strand, within BWI76_RS23390 at 4877.602 kb on + strand, within BWI76_RS23390 at 4877.625 kb on + strand, within BWI76_RS23390 at 4877.690 kb on + strand, within BWI76_RS23390 at 4877.702 kb on + strand, within BWI76_RS23390 at 4877.717 kb on + strand, within BWI76_RS23390 at 4877.730 kb on + strand, within BWI76_RS23390 at 4877.763 kb on - strand, within BWI76_RS23390 at 4877.996 kb on - strand, within BWI76_RS23390 at 4878.172 kb on + strand at 4878.225 kb on + strand at 4878.548 kb on - strand, within BWI76_RS23395 at 4878.548 kb on - strand, within BWI76_RS23395 at 4878.585 kb on - strand, within BWI76_RS23395 at 4878.587 kb on + strand, within BWI76_RS23395 at 4878.637 kb on - strand, within BWI76_RS23395 at 4878.955 kb on - strand, within BWI76_RS23395 at 4878.959 kb on + strand, within BWI76_RS23395 at 4878.969 kb on - strand, within BWI76_RS23395 at 4879.015 kb on - strand, within BWI76_RS23395 at 4879.015 kb on - strand, within BWI76_RS23395 at 4879.100 kb on - strand, within BWI76_RS23395 at 4879.102 kb on + strand, within BWI76_RS23395 at 4879.123 kb on + strand, within BWI76_RS23395 at 4879.287 kb on + strand, within BWI76_RS23395 at 4879.428 kb on + strand at 4879.434 kb on - strand at 4879.583 kb on + strand at 4879.647 kb on - strand at 4879.816 kb on + strand, within BWI76_RS23400 at 4879.916 kb on + strand, within BWI76_RS23400 at 4879.938 kb on - strand, within BWI76_RS23400 at 4879.963 kb on + strand, within BWI76_RS23400 at 4880.063 kb on - strand, within BWI76_RS23400 at 4880.420 kb on - strand, within BWI76_RS23400
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 4,877,402 - BWI76_RS23390 0.27 -0.6 4,877,602 + BWI76_RS23390 0.45 -0.9 4,877,625 + BWI76_RS23390 0.47 +0.2 4,877,690 + BWI76_RS23390 0.53 -0.7 4,877,702 + BWI76_RS23390 0.54 -0.3 4,877,717 + BWI76_RS23390 0.55 -0.1 4,877,730 + BWI76_RS23390 0.56 -0.1 4,877,763 - BWI76_RS23390 0.59 +0.2 4,877,996 - BWI76_RS23390 0.80 +0.0 4,878,172 + -0.2 4,878,225 + -1.2 4,878,548 - BWI76_RS23395 0.24 -0.4 4,878,548 - BWI76_RS23395 0.24 -1.5 4,878,585 - BWI76_RS23395 0.27 -1.4 4,878,587 + BWI76_RS23395 0.27 +1.5 4,878,637 - BWI76_RS23395 0.31 -2.4 4,878,955 - BWI76_RS23395 0.56 +0.5 4,878,959 + BWI76_RS23395 0.56 +0.5 4,878,969 - BWI76_RS23395 0.57 +0.1 4,879,015 - BWI76_RS23395 0.60 -2.4 4,879,015 - BWI76_RS23395 0.60 +1.1 4,879,100 - BWI76_RS23395 0.67 +0.5 4,879,102 + BWI76_RS23395 0.67 +2.5 4,879,123 + BWI76_RS23395 0.69 +0.8 4,879,287 + BWI76_RS23395 0.81 +1.2 4,879,428 + +0.9 4,879,434 - -0.2 4,879,583 + -1.7 4,879,647 - +0.1 4,879,816 + BWI76_RS23400 0.19 +0.7 4,879,916 + BWI76_RS23400 0.28 +2.9 4,879,938 - BWI76_RS23400 0.30 +0.3 4,879,963 + BWI76_RS23400 0.32 +1.1 4,880,063 - BWI76_RS23400 0.41 +0.3 4,880,420 - BWI76_RS23400 0.73 +0.0
Or see this region's nucleotide sequence