Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22285 and BWI76_RS22290 are separated by 256 nucleotides BWI76_RS22290 and BWI76_RS22295 are separated by 26 nucleotides
BWI76_RS22285: BWI76_RS22285 - transcriptional regulator, at 4,645,571 to 4,646,584
_RS22285
BWI76_RS22290: BWI76_RS22290 - PTS cellobiose/arbutin/salicin transporter subunit IIBC, at 4,646,841 to 4,648,283
_RS22290
BWI76_RS22295: BWI76_RS22295 - 6-phospho-beta-glucosidase, at 4,648,310 to 4,649,734
_RS22295
Position (kb)
4646
4647
4648
4649 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4646.340 kb on + strand, within BWI76_RS22285 at 4646.350 kb on - strand, within BWI76_RS22285 at 4646.357 kb on + strand, within BWI76_RS22285 at 4646.448 kb on - strand, within BWI76_RS22285 at 4646.573 kb on - strand at 4646.665 kb on + strand at 4646.919 kb on - strand at 4646.993 kb on - strand, within BWI76_RS22290 at 4647.091 kb on - strand, within BWI76_RS22290 at 4647.443 kb on + strand, within BWI76_RS22290 at 4647.506 kb on - strand, within BWI76_RS22290 at 4647.515 kb on + strand, within BWI76_RS22290 at 4647.688 kb on + strand, within BWI76_RS22290 at 4647.691 kb on - strand, within BWI76_RS22290 at 4647.691 kb on - strand, within BWI76_RS22290 at 4647.691 kb on - strand, within BWI76_RS22290 at 4648.094 kb on + strand, within BWI76_RS22290 at 4648.139 kb on + strand at 4648.212 kb on - strand at 4648.212 kb on - strand at 4648.301 kb on + strand at 4648.586 kb on - strand, within BWI76_RS22295 at 4648.819 kb on - strand, within BWI76_RS22295 at 4648.833 kb on + strand, within BWI76_RS22295 at 4649.018 kb on - strand, within BWI76_RS22295 at 4649.040 kb on - strand, within BWI76_RS22295 at 4649.119 kb on - strand, within BWI76_RS22295 at 4649.173 kb on - strand, within BWI76_RS22295 at 4649.251 kb on - strand, within BWI76_RS22295
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 4,646,340 + BWI76_RS22285 0.76 -1.2 4,646,350 - BWI76_RS22285 0.77 +0.4 4,646,357 + BWI76_RS22285 0.78 -0.8 4,646,448 - BWI76_RS22285 0.86 +0.6 4,646,573 - +1.6 4,646,665 + +0.6 4,646,919 - +1.2 4,646,993 - BWI76_RS22290 0.11 +0.4 4,647,091 - BWI76_RS22290 0.17 -0.1 4,647,443 + BWI76_RS22290 0.42 +0.6 4,647,506 - BWI76_RS22290 0.46 +3.1 4,647,515 + BWI76_RS22290 0.47 +0.4 4,647,688 + BWI76_RS22290 0.59 +0.2 4,647,691 - BWI76_RS22290 0.59 +0.2 4,647,691 - BWI76_RS22290 0.59 -0.6 4,647,691 - BWI76_RS22290 0.59 +0.3 4,648,094 + BWI76_RS22290 0.87 +0.4 4,648,139 + -1.6 4,648,212 - -1.3 4,648,212 - -0.0 4,648,301 + -0.0 4,648,586 - BWI76_RS22295 0.19 +0.6 4,648,819 - BWI76_RS22295 0.36 -0.0 4,648,833 + BWI76_RS22295 0.37 -3.5 4,649,018 - BWI76_RS22295 0.50 +0.4 4,649,040 - BWI76_RS22295 0.51 -0.5 4,649,119 - BWI76_RS22295 0.57 +0.7 4,649,173 - BWI76_RS22295 0.61 -0.7 4,649,251 - BWI76_RS22295 0.66 -1.4
Or see this region's nucleotide sequence