Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18510 and BWI76_RS18515 overlap by 1 nucleotides BWI76_RS18515 and BWI76_RS18520 overlap by 4 nucleotides
BWI76_RS18510: BWI76_RS18510 - membrane protein, at 3,839,402 to 3,840,487
_RS18510
BWI76_RS18515: BWI76_RS18515 - multidrug transporter AcrB, at 3,840,487 to 3,843,549
_RS18515
BWI76_RS18520: BWI76_RS18520 - hypothetical protein, at 3,843,546 to 3,844,511
_RS18520
Position (kb)
3840
3841
3842
3843
3844 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3839.501 kb on + strand at 3839.502 kb on - strand at 3839.526 kb on + strand, within BWI76_RS18510 at 3839.526 kb on + strand, within BWI76_RS18510 at 3839.567 kb on - strand, within BWI76_RS18510 at 3839.670 kb on - strand, within BWI76_RS18510 at 3839.678 kb on + strand, within BWI76_RS18510 at 3839.812 kb on + strand, within BWI76_RS18510 at 3839.909 kb on + strand, within BWI76_RS18510 at 3839.942 kb on + strand, within BWI76_RS18510 at 3839.972 kb on + strand, within BWI76_RS18510 at 3840.303 kb on - strand, within BWI76_RS18510 at 3840.305 kb on + strand, within BWI76_RS18510 at 3840.313 kb on - strand, within BWI76_RS18510 at 3840.324 kb on + strand, within BWI76_RS18510 at 3840.361 kb on + strand, within BWI76_RS18510 at 3840.399 kb on + strand at 3840.579 kb on - strand at 3840.728 kb on + strand at 3840.731 kb on - strand at 3840.949 kb on - strand, within BWI76_RS18515 at 3840.949 kb on - strand, within BWI76_RS18515 at 3841.128 kb on + strand, within BWI76_RS18515 at 3841.335 kb on + strand, within BWI76_RS18515 at 3841.545 kb on + strand, within BWI76_RS18515 at 3841.695 kb on + strand, within BWI76_RS18515 at 3841.739 kb on + strand, within BWI76_RS18515 at 3841.739 kb on + strand, within BWI76_RS18515 at 3841.794 kb on + strand, within BWI76_RS18515 at 3841.997 kb on - strand, within BWI76_RS18515 at 3842.255 kb on + strand, within BWI76_RS18515 at 3842.279 kb on + strand, within BWI76_RS18515 at 3842.284 kb on + strand, within BWI76_RS18515 at 3842.284 kb on + strand, within BWI76_RS18515 at 3842.504 kb on - strand, within BWI76_RS18515 at 3842.805 kb on + strand, within BWI76_RS18515 at 3842.965 kb on + strand, within BWI76_RS18515 at 3843.543 kb on + strand at 3843.726 kb on - strand at 3843.820 kb on + strand, within BWI76_RS18520 at 3843.848 kb on + strand, within BWI76_RS18520 at 3843.902 kb on - strand, within BWI76_RS18520 at 3843.909 kb on + strand, within BWI76_RS18520 at 3843.909 kb on + strand, within BWI76_RS18520 at 3843.939 kb on + strand, within BWI76_RS18520 at 3844.028 kb on - strand, within BWI76_RS18520 at 3844.028 kb on - strand, within BWI76_RS18520 at 3844.075 kb on - strand, within BWI76_RS18520 at 3844.105 kb on - strand, within BWI76_RS18520 at 3844.115 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.193 kb on + strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.201 kb on - strand, within BWI76_RS18520 at 3844.259 kb on + strand, within BWI76_RS18520 at 3844.259 kb on + strand, within BWI76_RS18520 at 3844.387 kb on + strand, within BWI76_RS18520 at 3844.395 kb on - strand, within BWI76_RS18520 at 3844.395 kb on - strand, within BWI76_RS18520 at 3844.544 kb on - strand at 3844.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 3,839,501 + +0.1 3,839,502 - -2.5 3,839,526 + BWI76_RS18510 0.11 -1.0 3,839,526 + BWI76_RS18510 0.11 -0.3 3,839,567 - BWI76_RS18510 0.15 -1.3 3,839,670 - BWI76_RS18510 0.25 -0.0 3,839,678 + BWI76_RS18510 0.25 -1.6 3,839,812 + BWI76_RS18510 0.38 +1.7 3,839,909 + BWI76_RS18510 0.47 +1.2 3,839,942 + BWI76_RS18510 0.50 +0.5 3,839,972 + BWI76_RS18510 0.52 +1.0 3,840,303 - BWI76_RS18510 0.83 +0.2 3,840,305 + BWI76_RS18510 0.83 +0.1 3,840,313 - BWI76_RS18510 0.84 +0.5 3,840,324 + BWI76_RS18510 0.85 -0.4 3,840,361 + BWI76_RS18510 0.88 +0.2 3,840,399 + +1.6 3,840,579 - -2.3 3,840,728 + +0.7 3,840,731 - +0.6 3,840,949 - BWI76_RS18515 0.15 -0.8 3,840,949 - BWI76_RS18515 0.15 +0.2 3,841,128 + BWI76_RS18515 0.21 -0.4 3,841,335 + BWI76_RS18515 0.28 +2.0 3,841,545 + BWI76_RS18515 0.35 -0.5 3,841,695 + BWI76_RS18515 0.39 +0.4 3,841,739 + BWI76_RS18515 0.41 +3.4 3,841,739 + BWI76_RS18515 0.41 -1.0 3,841,794 + BWI76_RS18515 0.43 -2.3 3,841,997 - BWI76_RS18515 0.49 +0.4 3,842,255 + BWI76_RS18515 0.58 -2.1 3,842,279 + BWI76_RS18515 0.59 +0.2 3,842,284 + BWI76_RS18515 0.59 +0.6 3,842,284 + BWI76_RS18515 0.59 +1.2 3,842,504 - BWI76_RS18515 0.66 +0.6 3,842,805 + BWI76_RS18515 0.76 +1.0 3,842,965 + BWI76_RS18515 0.81 +0.8 3,843,543 + -0.4 3,843,726 - -0.6 3,843,820 + BWI76_RS18520 0.28 -1.3 3,843,848 + BWI76_RS18520 0.31 -2.0 3,843,902 - BWI76_RS18520 0.37 -0.9 3,843,909 + BWI76_RS18520 0.38 +0.2 3,843,909 + BWI76_RS18520 0.38 -1.3 3,843,939 + BWI76_RS18520 0.41 -1.4 3,844,028 - BWI76_RS18520 0.50 -0.4 3,844,028 - BWI76_RS18520 0.50 +1.0 3,844,075 - BWI76_RS18520 0.55 -0.3 3,844,105 - BWI76_RS18520 0.58 +0.1 3,844,115 + BWI76_RS18520 0.59 -1.0 3,844,193 + BWI76_RS18520 0.67 -1.5 3,844,193 + BWI76_RS18520 0.67 +0.3 3,844,193 + BWI76_RS18520 0.67 -0.9 3,844,193 + BWI76_RS18520 0.67 -1.5 3,844,193 + BWI76_RS18520 0.67 -1.1 3,844,193 + BWI76_RS18520 0.67 +0.3 3,844,193 + BWI76_RS18520 0.67 +1.1 3,844,193 + BWI76_RS18520 0.67 +0.9 3,844,193 + BWI76_RS18520 0.67 -0.4 3,844,193 + BWI76_RS18520 0.67 -0.8 3,844,193 + BWI76_RS18520 0.67 +1.0 3,844,193 + BWI76_RS18520 0.67 +0.2 3,844,193 + BWI76_RS18520 0.67 +1.2 3,844,193 + BWI76_RS18520 0.67 -0.6 3,844,201 - BWI76_RS18520 0.68 -1.1 3,844,201 - BWI76_RS18520 0.68 +1.1 3,844,201 - BWI76_RS18520 0.68 -0.2 3,844,201 - BWI76_RS18520 0.68 -0.2 3,844,201 - +1.0 3,844,201 - BWI76_RS18520 0.68 -2.6 3,844,201 - BWI76_RS18520 0.68 +1.0 3,844,201 - BWI76_RS18520 0.68 -0.4 3,844,201 - BWI76_RS18520 0.68 +0.4 3,844,201 - BWI76_RS18520 0.68 +0.1 3,844,201 - BWI76_RS18520 0.68 +0.7 3,844,201 - BWI76_RS18520 0.68 -0.9 3,844,259 + BWI76_RS18520 0.74 +2.6 3,844,259 + BWI76_RS18520 0.74 +0.4 3,844,387 + BWI76_RS18520 0.87 -0.0 3,844,395 - BWI76_RS18520 0.88 +1.4 3,844,395 - BWI76_RS18520 0.88 -0.1 3,844,544 - +0.2 3,844,546 + +0.3
Or see this region's nucleotide sequence