Experiment: Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17565 and BWI76_RS17570 are separated by 65 nucleotides BWI76_RS17570 and BWI76_RS17575 are separated by 12 nucleotides
BWI76_RS17565: BWI76_RS17565 - hypothetical protein, at 3,647,487 to 3,648,092
_RS17565
BWI76_RS17570: BWI76_RS17570 - iron-sulfur-binding protein, at 3,648,158 to 3,648,616
_RS17570
BWI76_RS17575: BWI76_RS17575 - hypothetical protein, at 3,648,629 to 3,651,841
_RS17575
Position (kb)
3648
3649
3650
3651
3652 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3647.834 kb on + strand, within BWI76_RS17565 at 3648.411 kb on - strand, within BWI76_RS17570 at 3648.498 kb on - strand, within BWI76_RS17570 at 3648.905 kb on + strand at 3648.928 kb on - strand at 3649.014 kb on + strand, within BWI76_RS17575 at 3649.090 kb on + strand, within BWI76_RS17575 at 3649.186 kb on + strand, within BWI76_RS17575 at 3649.304 kb on - strand, within BWI76_RS17575 at 3649.522 kb on - strand, within BWI76_RS17575 at 3649.561 kb on - strand, within BWI76_RS17575 at 3649.859 kb on - strand, within BWI76_RS17575 at 3649.908 kb on + strand, within BWI76_RS17575 at 3649.973 kb on + strand, within BWI76_RS17575 at 3650.116 kb on + strand, within BWI76_RS17575 at 3650.174 kb on - strand, within BWI76_RS17575 at 3650.490 kb on - strand, within BWI76_RS17575 at 3650.844 kb on - strand, within BWI76_RS17575 at 3650.874 kb on - strand, within BWI76_RS17575 at 3650.874 kb on - strand, within BWI76_RS17575 at 3650.963 kb on + strand, within BWI76_RS17575 at 3651.152 kb on + strand, within BWI76_RS17575 at 3651.283 kb on + strand, within BWI76_RS17575 at 3651.368 kb on - strand, within BWI76_RS17575 at 3651.617 kb on - strand at 3651.715 kb on - strand at 3651.782 kb on - strand at 3651.812 kb on - strand at 3652.543 kb on + strand at 3652.546 kb on - strand at 3652.606 kb on - strand at 3652.606 kb on - strand at 3652.609 kb on + strand at 3652.615 kb on - strand at 3652.681 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.719 kb on + strand at 3652.727 kb on - strand at 3652.727 kb on - strand at 3652.727 kb on - strand at 3652.727 kb on - strand at 3652.727 kb on - strand at 3652.798 kb on - strand at 3652.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL remove 3,647,834 + BWI76_RS17565 0.57 +0.8 3,648,411 - BWI76_RS17570 0.55 -0.3 3,648,498 - BWI76_RS17570 0.74 +0.9 3,648,905 + +0.0 3,648,928 - -0.1 3,649,014 + BWI76_RS17575 0.12 +1.3 3,649,090 + BWI76_RS17575 0.14 +1.6 3,649,186 + BWI76_RS17575 0.17 -0.4 3,649,304 - BWI76_RS17575 0.21 -0.4 3,649,522 - BWI76_RS17575 0.28 +1.5 3,649,561 - BWI76_RS17575 0.29 -1.3 3,649,859 - BWI76_RS17575 0.38 -0.6 3,649,908 + BWI76_RS17575 0.40 -0.9 3,649,973 + BWI76_RS17575 0.42 +1.4 3,650,116 + BWI76_RS17575 0.46 +1.2 3,650,174 - BWI76_RS17575 0.48 +0.7 3,650,490 - BWI76_RS17575 0.58 +0.7 3,650,844 - BWI76_RS17575 0.69 +0.8 3,650,874 - BWI76_RS17575 0.70 +0.3 3,650,874 - BWI76_RS17575 0.70 -1.6 3,650,963 + BWI76_RS17575 0.73 +3.0 3,651,152 + BWI76_RS17575 0.79 +0.6 3,651,283 + BWI76_RS17575 0.83 +0.3 3,651,368 - BWI76_RS17575 0.85 +0.1 3,651,617 - +3.3 3,651,715 - +0.9 3,651,782 - +1.6 3,651,812 - -0.6 3,652,543 + -0.6 3,652,546 - -0.6 3,652,606 - -0.3 3,652,606 - -0.6 3,652,609 + +0.7 3,652,615 - -1.4 3,652,681 + +0.9 3,652,719 + +0.2 3,652,719 + +1.2 3,652,719 + -1.3 3,652,719 + -3.1 3,652,719 + +0.9 3,652,719 + +0.9 3,652,727 - -1.5 3,652,727 - +0.7 3,652,727 - -0.3 3,652,727 - -1.1 3,652,727 - -1.9 3,652,798 - -0.2 3,652,801 - +0.0
Or see this region's nucleotide sequence